SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene597

Length: 508 nt

UniGene Fasta

>biog3_v1.0_unigene597
AATGTTGTTGCAAAAGAGGCTACAAGAAGGGAGTTGCCAATCTTAGTAGATGCTGAAAGAAAGAGAGAAGGTCTGGATGAATTGCTCACAATGACCGATTATGTTGTGTGCTCAGCAAAGTTTCCTCAGGCCTGGACAGAGGCACCATCTATTGCAAGTGCACTTCTTGGTATGGCTCTGAGATTGCCTCGCCTTAAGTTTGTAATTGTTACTTTGGGTGAAGCAGGATGTATAATGCTTGAGAAACATACGCAAGAAACCACCGAAGGTGAAATTTCAGATGTAAATATTGTGTTGGAGTCACTACAGAAGAAAGCCAAAGGACTAAGTAGCAACCTACCTATTTCAGTTTCTTCAGAGGTAGGAAGCCTTGAAGCAGATGGGATAGGGAAAATCTATGGGAGATTGCTTGTAGGAACCAGTGAAGCTATACCTCCGTCAGAAATTGTTGACACTACCGGAGCAGGGGATGGATTTATTGGTGCCGTCTTATATGCTCTTATTGCCA

Ace file of the UniGene biog3_v1.0_unigene597

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10383	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Kinase, putative n=1 Tax=Ricinus communis RepID=B9T5V5_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	pfkb-like carbohydrate kinase family protein	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ribokinase.	EC:2.7.1.15	-	0.0	77%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pentose phosphate pathway	00030		0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	D-ribose metabolic process	GO:0006014	Biological Process	77%
Blast2go	phosphorylation	GO:0016310	Biological Process	77%
Blast2go	ribokinase activity	GO:0004747	Molecular Function	77%
Blast2go	protein binding	GO:0005515	Molecular Function	77%
Blast2go	chloroplast	GO:0009507	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Carbohydrate/purine kinase	IPR011611	-	0.0	-
Sma3	Ribokinase	IPR002139	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NTY9

Fln msg: Distance to subject end: 40 aas, your sequence is shorter than subject: 169 - 429

Fln protein: NVVAKEATRRELPILVDAERKREGLDELLTMTDYVVCSAKFPQAWTEAPSIASALLGMALRLPRLKFVIVTLGEAGCIMLEKHTQETTEGEISDVNIVLESLQKKAKGLSSNLPISVSSEVGSLEADGIGKIYGRLLVGTSEAIPPSEIVDTTGAGDGFIGAVLYALIA

Protein Length: 170

Fln nts: AATGTTGTTGCAAAAGAGGCTACAAGAAGGGAGTTGCCAATCTTAGTAGATGCTGAAAGAAAGAGAGAAGGTCTGGATGAATTGCTCACAATGACCGATTATGTTGTGTGCTCAGCAAAGTTTCCTCAGGCCTGGACAGAGGCACCATCTATTGCAAGTGCACTTCTTGGTATGGCTCTGAGATTGCCTCGCCTTAAGTTTGTAATTGTTACTTTGGGTGAAGCAGGATGTATAATGCTTGAGAAACATACGCAAGAAACCACCGAAGGTGAAATTTCAGATGTAAATATTGTGTTGGAGTCACTACAGAAGAAAGCCAAAGGACTAAGTAGCAACCTACCTATTTCAGTTTCTTCAGAGGTAGGAAGCCTTGAAGCAGATGGGATAGGGAAAATCTATGGGAGATTGCTTGTAGGAACCAGTGAAGCTATACCTCCGTCAGAAATTGTTGACACTACCGGAGCAGGGGATGGATTTATTGGTGCCGTCTTATATGCTCTTATTGCCA

Fln Alignment:

Contig597___VVAKEATRRELPILVDAERKREGLDELLTMTDYVVCSAKFPQAWTEAPSIASALLGMALRLPRLKFVIVTLGEAGCIMLEKHTQETTEGEISDVNIVLESLQKKAKGLSSNLPISVSSEVGSLEADGIGKIYGRLLVGTSEAIPPSEIVDTTGAGDGFIGAVLYALIA
A9NTY9________________MVAKEATRRELPILVDAERKREGLDQLLTMADYVVCSAKFPQAWTEAPSIASALLAMVLRLPRLKFVIVTLGEAGCIMLEKHMQETTEGEILDVNIVLESLQKKAKGLNSNLPISVSSEVGSLEAAGIGKIYGRLLVGTAEAIPPSELVDTTGAGDGFIGSVLYALIA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain