SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene593

Length: 441 nt

UniGene Fasta

>biog3_v1.0_unigene593
TTTGGGGTCGATCAATTCAGCTAGATCCTGTTGGAGTTCTCACACTGGAATTCGATGATGGTGAGGTGTTTCAGTGGAGTAAGGTTACAACGTCTATATACAATCTAATATTGGGGAAAATATACTGTGATCACTATGGGACAATGCGTATACAGGGGGATCGTGAATACTCGTGTAGGCTAAAGTTTAAGGAGCAATCCATAATTGATCGAAACCCTCATCAGGTACAAGGGTTTGTACAGGATAAGAGTGGGAATAAAGTAGCCACATTATTAGGGAAGTGGGATGAAAGCATTTATTACGTCCTTGGTGATATTGCCACAAAACCCAAGGGCTATGATCCAATGTCTGAGGCTTGCTTATTATGGAAAAAAAGTAAACGTGCGAAGAATCCCCACAAGATACAACTTAACTTCTTTCGCAATAACTCTCAATGACATT

Ace file of the UniGene biog3_v1.0_unigene593

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3632	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	OSBP(oxysterol binding protein)-related protein 1C [Arabidopsis thaliana] gb\|AEE82607.1\| OSBP(oxysterol binding protein)-related protein 1C [Arabidopsis thaliana]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	protein	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	81%

Source	InterPros	Term	Type	Identity
Sma3	Oxysterol-binding protein	IPR000648	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLZ0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 98 aas, your sequence is shorter than subject: 145 - 785

Fln protein: WGRSIQLDPVGVLTLEFDDGEVFQWSKVTTSIYNLILGKIYCDHYGTMRIQGDREYSCRLKFKEQSIIDRNPHQVQGFVQDKSGNKVATLLGKWDESIYYVLGDIATKPKGYDPMSEACLLWKKSKRAKNPHKIQLNFFRNNSQ*

Protein Length: 146

Fln nts: TTTGGGGTCGATCAATTCAGCTAGATCCTGTTGGAGTTCTCACACTGGAATTCGATGATGGTGAGGTGTTTCAGTGGAGTAAGGTTACAACGTCTATATACAATCTAATATTGGGGAAAATATACTGTGATCACTATGGGACAATGCGTATACAGGGGGATCGTGAATACTCGTGTAGGCTAAAGTTTAAGGAGCAATCCATAATTGATCGAAACCCTCATCAGGTACAAGGGTTTGTACAGGATAAGAGTGGGAATAAAGTAGCCACATTATTAGGGAAGTGGGATGAAAGCATTTATTACGTCCTTGGTGATATTGCCACAAAACCCAAGGGCTATGATCCAATGTCTGAGGCTTGCTTATTATGGAAAAAAAGTAAACGTGCGAAGAATCCCCACAAGATACAACTTAACTTCTTTCGCAATAACTCTCAATGACATT

Fln Alignment:

Contig593___WGRSIQLDPVGVLTLEFDDGEVFQWSKVTTSIYNLILGKIYCDHYGTMRIQGDREYSCRLKFKEQSIIDRNPHQVQGFVQDKSGNKVATLLGKWDESIYYVLGDIATKPKGYDPMSEACLLWKKSKRAKNPHKIQLNFF
B8LLZ0________________WGRSIQLDPIGVLTLEFDDGEVFHWSKVTTSIYNLILGKLYCDHYGTMRIQGNHEYSCKLKFKEQSIIDRNPHQVQGLVQNRTGNTVSTLFGKWDESLYYINDDAASKSKGDDPSSEAVLLWERNKPPKNPTRYNLTRF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain