SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene571

Length: 793 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene571 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8007	9/9

Source	Descriptions	Term	Type	e value	Identity
AutoFact	homeodomain-leucine zipper protein 56 [Glycine max]	-	-	8.00001e-41	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	homeobox-leucine zipper protein athb-6-like	-	-	0.0	62%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	62%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	62%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	62%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	62%
Blast2go	nucleus	GO:0005634	Cellular Component	62%

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-
Sma3		IPR012287	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
145	25	75			0.996473
148		75	25		0.996473
150	20	80			0.995493
153	80			20	0.995493
219			80	20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
750	763	CTC CTC CTC CTC CT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain