SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene550

Length: 1178 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene550

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28304	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to Bifunctional dihydrofolate reductase-thymidylate synthase n=1 Tax=Vitis vinifera RepID=UPI0001982DBD	-	-	73%
FL-Next	sp=Bifunctional dihydrofolate reductase-thymidylate synthase; Glycine max (Soybean) (Glycine hispida).	-	-	76%
Blast2go	dihydrofolate reductase-thymidylate synthase	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular nitrogen compound biosynthetic process	GO:0044271	Biological Process	0.0	85%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	85%

Source	InterPros	Term	Type	Identity
Sma3	Thymidylate synthase	IPR000398	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3	Bifunctional dihydrofolate reductase/thymidylate synthase	IPR012262	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Dihydrofolate reductase conserved site	IPR017925	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: P51820

Fln msg: STOP codon was not found. Distance to subject end: 6 aas, your sequence is shorter than subject: 392 - 530

Fln protein: NVFVIGGGQIYREALSTPNCDAIHITEIENAFECDTFITPIDASVFRPWYSSLPFVENDIRFSFTTYVRIRNSSNVDSLEPSHRFGNGSNNMDMYDRLESRQYQFLPKLIFERHEEYLYLRLVQDIIANGVEKGDRTGTGTLSKFGCQMRFNLRKTLPLLTTKRVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASREYLDSIGLKEREEGDLGPVYGFQWRHFGARYTNMNADYSGQGFDQLADVIHKIKFNPEDRRIILSAWNPADLKLMALPPCHMFAQFYVAKGELSCQMYQRSCDMGLGVPFNIASYALLTCMIAHVCDFVPGDLIHVLGDAHVYRNHVGPLLEQLQNSPRPFPVLKINPEKKDIDSFVANDFELIGYDSHKT

Protein Length: 393

Fln nts: AATGTATTTGTAATTGGAGGTGGTCAAATTTATAGAGAAGCACTCTCTACACCTAACTGTGATGCAATTCACATCACTGAGATAGAGAATGCATTTGAGTGTGATACATTCATCACACCCATAGATGCATCTGTGTTTCGTCCTTGGTATTCGTCATTGCCATTTGTGGAAAATGATATTCGCTTTTCTTTCACCACCTATGTTCGTATTAGGAATTCCTCTAATGTGGACTCTCTAGAGCCTTCTCACAGATTTGGAAATGGATCGAACAACATGGATATGTACGATAGACTTGAATCTCGGCAGTATCAATTTCTCCCCAAATTAATTTTTGAAAGACACGAGGAGTATTTGTATCTTAGATTGGTACAGGATATAATTGCAAATGGAGTGGAGAAGGGAGATCGGACAGGAACTGGCACATTGTCAAAATTTGGCTGTCAGATGCGATTCAATCTGCGAAAAACTTTACCACTTCTCACAACAAAGCGAGTTTTCTGGCGTGGTGTGGTTGAAGAGCTCTTATGGTTCATAAGTGGTTCAACAAATGCAAAGGTTCTGCAAGAAAAGGGCATACATATATGGGATGGTAATGCATCGAGAGAGTACCTTGATAGCATTGGGCTGAAAGAAAGAGAGGAAGGTGATTTGGGACCTGTATATGGATTTCAGTGGAGGCATTTTGGAGCTAGGTATACAAACATGAATGCAGATTACAGTGGACAAGGTTTTGATCAACTAGCAGATGTAATTCATAAGATTAAGTTTAATCCAGAAGATCGTCGCATTATACTCTCAGCATGGAACCCAGCGGACCTTAAGCTCATGGCTCTTCCTCCATGCCACATGTTTGCTCAGTTTTATGTTGCAAAAGGGGAATTGTCATGCCAGATGTACCAACGATCCTGTGACATGGGCCTTGGCGTACCTTTCAACATTGCATCATATGCACTTTTAACATGCATGATTGCCCATGTTTGTGACTTTGTTCCCGGTGATCTTATCCATGTGCTTGGAGATGCTCACGTGTACAGAAACCATGTTGGGCCTCTTTTAGAACAACTGCAGAACTCACCTAGACCGTTTCCAGTTTTGAAAATCAATCCTGAAAAGAAAGATATCGATTCATTTGTTGCGAATGATTTCGAACTCATTGGATATGATTCTCATAAGACATT

Fln Alignment:

Contig550___VFVIGGGQIYREALSTPNCDAIHITEIENAFECDTFITPIDASVFRPWYSSLPFVENDIRFSFTTYVRIRNSS------NVDSLEPSHRFGNGSNNMDMYDRLESRQYQFLPKLIFERHEEYLYLRLVQDIIANGVEKGDRTGTGTLSKFGCQMRFNXXXXXXXXXXXXVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASREYLDSIGLKEREEGDLGPVYGFQWRHFGARYTNMNADYSGQGFDQLADVIHKIKFNPEDRRIILSAWNPADLKLMALPPCHMFAQFYVAKGELSCQMYQRSCDMGLGVPFNIASYALLTCMIAHVCDFVPGDLIHVLGDAHVYRNHVGPLLEQLQNSPRPFPVLKINPEKKDIDSFVANDFELIGYDSHK
P51820________________VFVIGGGQIFREALNVPGCEAIHLTEIQSSIECDTFMPPVDFTIFRPWYSSFPKVENNIRYSFTTYVRVRSSAAESAGQNIDPL-----LDNNSESM----KFEVKDFSFLPKMISERHEEYLYLKLVQDIIAEGTTKGDRTGTGTLSKFGCQMRFNLRGNFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASREYLDGVGLTEREEGDLGPVYGFQWRHFGARYTDMHHDYSGQGFDQLLDVINKIKRNPDDRRIILSAWNPVDLKLMALPPCHMFAQFYVAHGELSCQMYQRSADMGLGIPFNIASYALLTCMIAHVCDLIPGDFIHVIGDAHIYRNHVRPLQEQLHNQPKPFPTLKINPKKKDIDSFVAADFKLIGYDPHQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain