SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene547

Length: 347 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene547
TTAGTACCCTACCAGCTCCAGCAAATGAGGGAAAAGTAGGCAACTATTGGCTTCATTTAGAGACACAAGCGTATTTTGATGATGAGCAACATTACAAAATGATCAAAGCAATGTGCAGGTTGAGCTGCAGTGTTTGTGACAATACTTGTTGGGCTCAAGAGCCAAGGAAAGAGTTACCAAAGCGTCACCGAGAGTTTAAACATAGAGATCAGTTGAGGAAGCACTTATTTTATGCACACAAGCTTTCTATGTGCACCTTATGCCTGGAAGGCCGAAAGGTATTTATTTGTGTAACAGAAGCTTTATACACGGTACGACAGCTAGACCGACATTTATCTAGAGACATT

Ace file of the UniGene biog3_v1.0_unigene547 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12586	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	RING Zn-finger domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4IK69_ARATH	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	56%
Blast2go	protein	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, RanBP2-type	IPR001876	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5BNK3

Fln msg: Distance to subject end: 63 aas, your sequence is shorter than subject: 115 - 242

Fln protein: STLPAPANEGKVGNYWLHLETQAYFDDEQHYKMIKAMCRLSCSVCDNTCWAQEPRKELPKRHREFKHRDQLRKHLFYAHKLSMCTLCLEGRKVFICVTEALYTVRQLDRHLSRDI

Protein Length: 116

Fln nts: TTAGTACCCTACCAGCTCCAGCAAATGAGGGAAAAGTAGGCAACTATTGGCTTCATTTAGAGACACAAGCGTATTTTGATGATGAGCAACATTACAAAATGATCAAAGCAATGTGCAGGTTGAGCTGCAGTGTTTGTGACAATACTTGTTGGGCTCAAGAGCCAAGGAAAGAGTTACCAAAGCGTCACCGAGAGTTTAAACATAGAGATCAGTTGAGGAAGCACTTATTTTATGCACACAAGCTTTCTATGTGCACCTTATGCCTGGAAGGCCGAAAGGTATTTATTTGTGTAACAGAAGCTTTATACACGGTACGACAGCTAGACCGACATTTATCTAGAGACATT

Fln Alignment:

Contig547___STLPAPANEGKVGNYWLHLETQAYFDDEQHYKMIKAMCRLSCSVCDNTCWAQEPRKELPKRHREFKHRDQLRKHLFYAHKLSMCTLCLEGRKVFICVTEALYTVRQLDRHLS
A5BNK3________________SILPTESREGQLGMYWYHEDTQAFFDDVDHYKMIKAMCRLSCSVCDQ---MEEQSNDGSKRRQKFRNIDQLKGHLFHRHKLFMCSLCLEGRKVFIC-EQKLYNRAQLNQHIN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain