SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene539

Length: 508 nt

UniGene Fasta

>biog3_v1.0_unigene539
AATGTGAGCTGTTTGACCGGATGGATGAGGAGATTGACTGGCCTGGTGAGATGATGAAGCACCTACAGATTCCTAAGTGGCTACGTGTGGGCTCAAGAGAGGTCAGTGCTGCTCAAGATGCTATGTCTAAGCAGGCGTTAAGTAGGGGTTTTGTGGTACCTATTGGTACTAAAGAAGAAGAAGATAAATTATGTGCAATGCCCCCTATAACCATTCCGGAGAAGAAATCAGCCAATATAGAAAATGCTTCCAATCGAAAACCCTCTAAAGCTTCATCTAGTAACAAAAAACAGCTACCTAATAAACACAGAGGCATGCAATCTGTTGATGAAGGGGACGAGGAAATTGAAGTAAGTACGGAAGAGAAAGATGGTTCTTCTACACATGAAGAAGAGGGAGAAATAAAAGAAGATTTAGAAGATGAAGAAAACAGCAGGGCGGCTGATCTAGTGCTTAATGATAGAGTTCAGTCTGAAGAAGGTCAACTAGAATCCGATGGAGGTGAGGA

Ace file of the UniGene biog3_v1.0_unigene539

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8756	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Chromo domain protein, putative n=1 Tax=Ricinus communis RepID=B9RDU3_RICCO	-	-	47%
FL-Next	Isoform 2 of ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM	-	-	58%
Blast2go	atp-dependent helicase brm-like	-	-	59%

Source	GOs	Term	Type	Identity
Blast2go	regulation of gene expression, epigenetic	GO:0040029	Biological Process	59%
Blast2go	organ boundary specification between lateral organs and the meristem	GO:0010199	Biological Process	59%
Blast2go	DNA binding	GO:0003677	Molecular Function	59%
Blast2go	catalytic activity	GO:0003824	Molecular Function	59%
Blast2go	cytosol	GO:0005829	Cellular Component	59%
Blast2go	chromatin remodeling complex	GO:0016585	Cellular Component	59%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	HSA	IPR006562	-	-
Sma3	Agenet	IPR008395	-	-
Sma3	Domain of unknown function DUF1086	IPR009462	-	-
Sma3	Domain of unknown function DUF1087	IPR009463	-	-
Sma3		IPR012287	-	-
Sma3	Vps54-like	IPR012501	-	-
Sma3	HAS subgroup	IPR013999	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase/SANT-associated, DNA binding	IPR014012	-	-
Sma3		IPR014021	-	-
Sma3		IPR014778	-	-
Sma3	Glutamine-Leucine-Glutamine, QLQ	IPR014978	-	-
Sma3	ATPase, nucleosome remodelling ISWI, HAND domain	IPR015194	-	-
Sma3	SLIDE domain	IPR015195	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	SANT domain	IPR017884	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-
Sma3	Isocitrate lyase/phosphorylmutase, conserved site	IPR018523	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6EVK6-2

Fln msg: Distance to subject end: 483 aas, your sequence is shorter than subject: 168 - 2192

Fln protein: CELFDRMDEEIDWPGEMMKHLQIPKWLRVGSREVSAAQDAMSKQALSRGFVVPIGTKEEEDKLCAMPPITIPEKKSANIENASNRKPSKASSSNKKQLPNKHRGMQSVDEGDEEIEVSTEEKDGSSTHEEEGEIKEDLEDEENSRAADLVLNDRVQSEEGQLESDGGE

Protein Length: 169

Fln nts: AATGTGAGCTGTTTGACCGGATGGATGAGGAGATTGACTGGCCTGGTGAGATGATGAAGCACCTACAGATTCCTAAGTGGCTACGTGTGGGCTCAAGAGAGGTCAGTGCTGCTCAAGATGCTATGTCTAAGCAGGCGTTAAGTAGGGGTTTTGTGGTACCTATTGGTACTAAAGAAGAAGAAGATAAATTATGTGCAATGCCCCCTATAACCATTCCGGAGAAGAAATCAGCCAATATAGAAAATGCTTCCAATCGAAAACCCTCTAAAGCTTCATCTAGTAACAAAAAACAGCTACCTAATAAACACAGAGGCATGCAATCTGTTGATGAAGGGGACGAGGAAATTGAAGTAAGTACGGAAGAGAAAGATGGTTCTTCTACACATGAAGAAGAGGGAGAAATAAAAGAAGATTTAGAAGATGAAGAAAACAGCAGGGCGGCTGATCTAGTGCTTAATGATAGAGTTCAGTCTGAAGAAGGTCAACTAGAATCCGATGGAGGTGAGGA

Fln Alignment:

Contig539___ELFDRMDEEIDWPGEMMKHLQIPKWLRVGSREVSAAQDAMSKQ
Q6EVK6-2______________ELFDQMDEEFDWTEEMTNHEQVPKWLRASTREVNATVADLSKK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
150	33			66	0.997452
151	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
172	184	AAG AAG AAG AAG A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain