SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene534

Length: 2125 nt

UniGene Fasta

>biog3_v1.0_unigene534
AATGTTCTTCGATTGCTTCGTAGCGTGAGATTCAGGGTTTGTAAGCTTAGGGCTTCTTTTCCGAAGGGTTGGATGCGCTGATCAATCGCTGCTGTGCGGGACTTCTTCCGAAGAAGATTTCAAAGGTGAGTCCTATTGGTTGTCAATCGCATTCAAAGTGGAGGGTGTACAGGTTGAATATTCTTTTATGTCTGAAGCCGTTTGTTCATATTTGGGGCTGATTGGGCTGCTTGGCGAATACTGTCCTACATCAAAGAAAAAGAATAAACAGCTTCGTCTTTGTAGCAAAAAATTTTGGCTGTATGCAGCCAAAGCCAAGTCAGAAGTCGAGGTTGATTTGGGTTTGCAGTTGGATGCACCCATTTTTCCACGTGCAAGGTGGAGTGTTAAAACATCATAGAGAAAGTCCCTTTTCCCCGCAGGCATTTGGTGGCCTTTTACATACTCTAGTATCTAACTCTTGATAGAAACGGTTCTTCAAATTCCAAATTCACTCTTGCATTCCACTTAATCACTAATTAGAAAATATGGCTCTTCTAAATATTGGCGAGGGCAACAAAGATGATGCCTTTTACAGGTATAAGATGCCTAAGCTGATTACAAAAATTGAGGGACGAGGTAATGGCATAAAGACAAATCTTGTCAATATGGTAGATGTGGCTAAAGCTCTTGCCAGACCCCCTTCATATACAACAAAGTATTTCGGCTGTGAACTGGGTGCGCAATCAAAGTTTGATGAAAAATCTGGGACTGCTCTTGTCAATGGTGCTCATGATAGTTCTAAACTTGTAGCTTTGTTGGAGATTTTTATCAAGAAGTATGTGCAGTGCTATGGATGTGGCAATCCTGAGACAGAGATCCTTATTTCAAAAACACAAATGATTTCACTGAAGTGTGCTGCATGTGGGTATGTTTCAGATGTTGATATGAGGGACAAGCTTACTACGTTTATTTTGAAGAATCCGCCAGAGCAGAAGAAGGGAGGCAAAGATAAGAAGGCCATGAGAAGAGCAGAAAAGGAACGTTTGAAAGCAGGAGAGGCTATTGATGAAGAAGCTAAAAAATCCAAGAAAGAATCCAAGAAGAAGGTCCACGAGGTTGCATCCAAGGTTGCTAAGAAGAAAACTAGTTCTGACGAAGACCGTTCTCCTCCTGAAAGCCATGTTGATGAAAACGAGGAGCTGGATGAGAATGATGATGTGCAATGGGCTACTGATACTTCTCTTGAAGCCGCACAGCAGCGTATCAGAGAGCAGTTGACAGCTGCTACAAGTGAAATGGTCATGTTGGACAGCCAGGAAGAACAAAAGTCGAAGTCACCAAAGAAGCCTTCAGGCAAGAATGAAAAGGTTGAGCTTGATAAGAAATCTCAAGCTGAAAACGGTGATGGGGTGTCTGAGAAGCCCGTCAAGGATGAAAAGGTTGAGCTTGATAACAATACTCAAGCTGAAAACGGTGATGAGGTATTTGAGAATCCCATTCAACAGGATATTGAGGAGGAGACTGTTCTGACCAAATTGAACACATCGAGCATTCATGATGAGCTTGTCCTTGCTTTCAAGGAGCGCTTGAAGATTGGAGATTCTCCGAAAAAATTACAATCCTACGTACAATCTTCAAATGGTTCTCCACAGGAAATCATGAATGCCTATTTTGAAGCTCTTTTTGAGGGCGTCGGAAGAGGATTTTCAAAAGAGGCAGTTATGAAGAAAGGCTATCTATCCAGAGTTGTGCAAGATGAAAATTCTCAGTCGATGCTGCTTGGTGCTATTGAGGCATTTTGTAACCATGCACGAGCTGAAGCGGTCAAAGAGGTTGCTTTAGTTCTTAAATTTTTATATGATGAGGACATCTTGGAGGAAGACATCATTTTCCAATGGTATGATAAAAGTTCAGCTGGAAACACCTCACAAATATGGAAAAGTGTCAAACCATTTGTTGAGTGGCTGAAGAGTGCCGAGGCTGAATCAGATGAAGAATAAGTCTTTATCCTCTTTGGAAAGTTACCTGCATTCTAGGAATCTTACAGTACTGCTAGGAACTTATGATTCTCCAATATAAGGCTGAGGACTGAAGCTACGAGTGATATATGCCGTTTATATATTTGAGTATTTGCTTGTGCTAT

Ace file of the UniGene biog3_v1.0_unigene534

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14491	100/101

Source	Descriptions	Term	Type	Identity
AutoFact	eukaryotic translation initiation factor 5 [Zea mays]	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	eukaryotic translation initiation factor 5	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	69%
Blast2go	RNA metabolic process	GO:0016070	Biological Process	69%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	69%
Blast2go	cytoplasm	GO:0005737	Cellular Component	69%
Blast2go	nucleus	GO:0005634	Cellular Component	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Translation initiation factor IF2/IF5	IPR002735	-	0.0	-
Sma3	eIF4-gamma/eIF5/eIF2-epsilon	IPR003307	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A851

Fln msg: your sequence is longer than subject: 485 - 454

Fln protein: MALLNIGEGNKDDAFYRYKMPKLITKIEGRGNGIKTNLVNMVDVAKALARPPSYTTKYFGCELGAQSKFDEKSGTALVNGAHDSSKLVALLEIFIKKYVQCYGCGNPETEILISKTQMISLKCAACGYVSDVDMRDKLTTFILKNPPEQKKGGKDKKAMRRAEKERLKAGEAIDEEAKKSKKESKKKVHEVASKVAKKKTSSDEDRSPPESHVDENEELDENDDVQWATDTSLEAAQQRIREQLTAATSEMVMLDSQEEQKSKSPKKPSGKNEKVELDKKSQAENGDGVSEKPVKDEKVELDNNTQAENGDEVFENPIQQDIEEETVLTKLNTSSIHDELVLAFKERLKIGDSPKKLQSYVQSSNGSPQEIMNAYFEALFEGVGRGFSKEAVMKKGYLSRVVQDENSQSMLLGAIEAFCNHARAEAVKEVALVLKFLYDEDILEEDIIFQWYDKSSAGNTSQIWKSVKPFVEWLKSAEAESDEE*

Protein Length: 486

Fln nts: AATGTTCTTCGATTGCTTCGTAGCGTGAGATTCAGGGTTTGTAAGCTTAGGGCTTCTTTTCCGAAGGGTTGGATGCGCTGATCAATCGCTGCTGTGCGGGACTTCTTCCGAAGAAGATTTCAAAGGTGAGTCCTATTGGTTGTCAATCGCATTCAAAGTGGAGGGTGTACAGGTTGAATATTCTTTTATGTCTGAAGCCGTTTGTTCATATTTGGGGCTGATTGGGCTGCTTGGCGAATACTGTCCTACATCAAAGAAAAAGAATAAACAGCTTCGTCTTTGTAGCAAAAAATTTTGGCTGTATGCAGCCAAAGCCAAGTCAGAAGTCGAGGTTGATTTGGGTTTGCAGTTGGATGCACCCATTTTTCCACGTGCAAGGTGGAGTGTTAAAACATCATAGAGAAAGTCCCTTTTCCCCGCAGGCATTTGGTGGCCTTTTACATACTCTAGTATCTAACTCTTGATAGAAACGGTTCTTCAAATTCCAAATTCACTCTTGCATTCCACTTAATCACTAATTAGAAAAT_-_ATGGCTCTTCTAAATATTGGCGAGGGCAACAAAGATGATGCCTTTTACAGGTATAAGATGCCTAAGCTGATTACAAAAATTGAGGGACGAGGTAATGGCATAAAGACAAATCTTGTCAATATGGTAGATGTGGCTAAAGCTCTTGCCAGACCCCCTTCATATACAACAAAGTATTTCGGCTGTGAACTGGGTGCGCAATCAAAGTTTGATGAAAAATCTGGGACTGCTCTTGTCAATGGTGCTCATGATAGTTCTAAACTTGTAGCTTTGTTGGAGATTTTTATCAAGAAGTATGTGCAGTGCTATGGATGTGGCAATCCTGAGACAGAGATCCTTATTTCAAAAACACAAATGATTTCACTGAAGTGTGCTGCATGTGGGTATGTTTCAGATGTTGATATGAGGGACAAGCTTACTACGTTTATTTTGAAGAATCCGCCAGAGCAGAAGAAGGGAGGCAAAGATAAGAAGGCCATGAGAAGAGCAGAAAAGGAACGTTTGAAAGCAGGAGAGGCTATTGATGAAGAAGCTAAAAAATCCAAGAAAGAATCCAAGAAGAAGGTCCACGAGGTTGCATCCAAGGTTGCTAAGAAGAAAACTAGTTCTGACGAAGACCGTTCTCCTCCTGAAAGCCATGTTGATGAAAACGAGGAGCTGGATGAGAATGATGATGTGCAATGGGCTACTGATACTTCTCTTGAAGCCGCACAGCAGCGTATCAGAGAGCAGTTGACAGCTGCTACAAGTGAAATGGTCATGTTGGACAGCCAGGAAGAACAAAAGTCGAAGTCACCAAAGAAGCCTTCAGGCAAGAATGAAAAGGTTGAGCTTGATAAGAAATCTCAAGCTGAAAACGGTGATGGGGTGTCTGAGAAGCCCGTCAAGGATGAAAAGGTTGAGCTTGATAACAATACTCAAGCTGAAAACGGTGATGAGGTATTTGAGAATCCCATTCAACAGGATATTGAGGAGGAGACTGTTCTGACCAAATTGAACACATCGAGCATTCATGATGAGCTTGTCCTTGCTTTCAAGGAGCGCTTGAAGATTGGAGATTCTCCGAAAAAATTACAATCCTACGTACAATCTTCAAATGGTTCTCCACAGGAAATCATGAATGCCTATTTTGAAGCTCTTTTTGAGGGCGTCGGAAGAGGATTTTCAAAAGAGGCAGTTATGAAGAAAGGCTATCTATCCAGAGTTGTGCAAGATGAAAATTCTCAGTCGATGCTGCTTGGTGCTATTGAGGCATTTTGTAACCATGCACGAGCTGAAGCGGTCAAAGAGGTTGCTTTAGTTCTTAAATTTTTATATGATGAGGACATCTTGGAGGAAGACATCATTTTCCAATGGTATGATAAAAGTTCAGCTGGAAACACCTCACAAATATGGAAAAGTGTCAAACCATTTGTTGAGTGGCTGAAGAGTGCCGAGGCTGAATCAGATGAAGAATAA___GTCTTTATCCTCTTTGGAAAGTTACCTGCATTCTAGGAATCTTACAGTACTGCTAGGAACTTATGATTCTCCAATATAAGGCTGAGGACTGAAGCTACGAGTGATATATGCCGTTTATATATTTGAGTATTTGCTTGTGCTAT

Fln Alignment:

Contig534___MALLNIGEGNKDDAFYRYKMPKLITKIEGRGNGIKTNLVNMVDVAKALARPPSYTTKYFGCELGAQSKFDEKSGTALVNGAHDSSKLVALLEIFIKKYVQCYGCGNPETEILISKTQMISLKCAACGYVSDVDMRDKLTTFILKNPPEQKKGGKDKKAMRRAEKERLKAGEAIDEXXXXXXXXXXXXXXXXXXXXXXXXXXXDEDRSPPESHVXXXXXXXXXXXVQWATDTSLEAAQQRIREQLTAATSEMVMLDXXXXXXXXXXXXXXGKNEKVELDKKSQAENGDGVSEKPVKDEKVELDNNTQAENGDEVFENPIQQDIEEETVLTKLNTSSIHDELVLAFKERLKIGDSPKKLQSYVQSSNGSPQEIMNAYFEALFEGVGRGFSKEAVMKKGYLSRVVQDENSQSMLLGAIEAFCNHARAEAVKEVALVLKFLYDEDILEEDIIFQWYDKSSAGNTSQIWKSVKPFVEWLKSAEAESDEE
D5A851________________MALLNIGEGNRDDAFYRYKMPKLMTKIEGRGNGIKTNLVNMVDVAKALARPPSYTTKYFGCELGAQSKFDEKTGIALVNGAHDNSKLVALLEIFIKKYVQCYGCGNPETEILISKTQMISLKCAACGHISDVDMRDKLTTFILKNPPEQKKGGKDKKAMRRAEKERLKAGEAIDEENKKVKKESKKKGHEVVSKVSKKKTGSDEDRSPPGSHV---DENEDDDEVQWETNTSLEAAQQRIREQLTSATSEMVMLD--TLEEPKPTKKSSGKNEKVEVDKKSKAENGDEVAEK------------------------PMEKDV-EETVLSKLNTISIHDELLVAFKERLKNGDTPKQLQNYMQSSDGSPQEIMNAYFEALFEGVGKGFSKEVSSKKGYLSGVVQDENSQSMLLGAIEAFCNHARAEAVKEVALVLKTLYDEDILEEDIIFQWYDKGSTGNASQIWKNVKPFVEWLKSAEAESDEE

SNPs (tot: 62)

Position	A %	C %	G %	T %	Probability
116	33		66		0.997452
119			33	66	0.997452
148		75	25		0.996473
149			75	25	0.996473
167	25		75		0.996473
268	80			20	0.995493
269		80	20		0.995493
270	80			20	0.995493
337	16			83	0.994512
338	16			83	0.994512
341			83	16	0.994512
349		50	50		1.0
494	20	80			0.995493
496		80	20		0.995493
517	20		80		0.995493
529	14			85	0.993533
530			85	14	0.993533
532		85		14	0.993533
646	88			11	0.923564
673	11	88			0.923564
676			87	12	0.992554
677	87			12	0.992554
805		25		75	0.996473
806	25			75	0.996473
860	14	85			0.993533
861	14	85			0.993533
863			14	85	0.993533
864	85			14	0.993533
888		85		14	0.993533
1001	10	90			0.90298
1046	20			80	0.999996
1047		20	80		0.999996
1050			80	20	0.999996
1157	88	11			0.923564
1158	88			11	0.923564
1159			88	11	0.923564
1160		88		11	0.923564
1181	11		88		0.923564
1182	11	88			0.923564
1336	22		77		0.999999
1339	77			22	0.999999
1340			77	22	0.999999
1431	20		80		0.995493
1434	80		20		0.995493
1435	80			20	0.995493
1475			75	25	0.996473
1528		14		85	0.993533
1576	12			87	0.992554
1579			87	12	0.992554
1587		87		12	0.992554
1601	85			14	0.993533
1634		83	16		0.994512
1773	20		80		0.995493
1775			80	20	0.995493
1777		80		20	0.995493
1798		80		20	0.995493
1818	33		66		0.997452
1820	14			85	0.993533
1922	80	20			0.995493
1924			80	20	0.995493
2015	33			66	0.997452
2019	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain