SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene502

Length: 490 nt

UniGene Fasta

>biog3_v1.0_unigene502
CAGGATTCGGGGGCTTCGGAATGTATGTCTTCCATTGCAGGTTCCTATGGTTACATTGCTCCAGAATATGCATACACGCTGAAAGTGGATGAAAAGAGTGATGTCTATAGCTTTGGAGTAGTTCTGCTGGAACTAGTCACTGGTAGAAGGCCCGTGGGGGAGTTTGGAGATGGTGTAGATATTGTTCAATGGGTAAACAAGATGACTAACTCAACCAAGGAAGGAGTTTCAAACATTTTGGACGAGAGACTGTCGTCAGTTCCTTTGCACGACGTTATCCACGTTTTCTGTGTGGCAATGGCATGTGTCGAAGAACATAGCGTAGAGAGGCCTACCATGAGAGAGGTTGTTCAGATGCTCAGTGACATTCCAAAGATCAAACCTTCTGAAAATCCCCTACCTGCTTCAGAAGGAGCGGAATCCCCCCAACAAGCCGGTGCTGCCCACCCTCCTGATCTCCTCTCTATTTGAATCCATTTTCAAATACATT

Ace file of the UniGene biog3_v1.0_unigene502

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28318	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor-like protein kinase n=2 Tax=Glycine max RepID=C6ZRW9_SOYBN	-	-	68%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	53%
Blast2go	leucine-rich receptor-like protein kinase bam1	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-amylase.	EC:3.2.1.2	-	0.0	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	82%
Blast2go	Metabolic pathways	01100		0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	regulation of meristem structural organization	GO:0009934	Biological Process	82%
Blast2go	response to water deprivation	GO:0009414	Biological Process	82%
Blast2go	microsporocyte differentiation	GO:0010480	Biological Process	82%
Blast2go	starch catabolic process	GO:0005983	Biological Process	82%
Blast2go	regulation of meristem growth	GO:0010075	Biological Process	82%
Blast2go	gametophyte development	GO:0048229	Biological Process	82%
Blast2go	beta-amylase activity	GO:0016161	Molecular Function	82%
Blast2go	kinase activity	GO:0016301	Molecular Function	82%
Blast2go	protein self-association	GO:0043621	Molecular Function	82%
Blast2go	receptor serine/threonine kinase binding	GO:0033612	Molecular Function	82%
Blast2go	cytosol	GO:0005829	Cellular Component	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: your sequence is shorter than subject: 157 - 998

Fln protein: QDSGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRRPVGEFGDGVDIVQWVNKMTNSTKEGVSNILDERLSSVPLHDVIHVFCVAMACVEEHSVERPTMREVVQMLSDIPKIKPSENPLPASEGAESPQQAGAAHPPDLLSI*

Protein Length: 158

Fln nts: CAGGATTCGGGGGCTTCGGAATGTATGTCTTCCATTGCAGGTTCCTATGGTTACATTGCTCCAGAATATGCATACACGCTGAAAGTGGATGAAAAGAGTGATGTCTATAGCTTTGGAGTAGTTCTGCTGGAACTAGTCACTGGTAGAAGGCCCGTGGGGGAGTTTGGAGATGGTGTAGATATTGTTCAATGGGTAAACAAGATGACTAACTCAACCAAGGAAGGAGTTTCAAACATTTTGGACGAGAGACTGTCGTCAGTTCCTTTGCACGACGTTATCCACGTTTTCTGTGTGGCAATGGCATGTGTCGAAGAACATAGCGTAGAGAGGCCTACCATGAGAGAGGTTGTTCAGATGCTCAGTGACATTCCAAAGATCAAACCTTCTGAAAATCCCCTACCTGCTTCAGAAGGAGCGGAATCCCCCCAACAAGCCGGTGCTGCCCACCCTCCTGATCTCCTCTCTATTTGA___ATCCATTTTCAAATACATT

Fln Alignment:

Contig502___SECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRRPVG-EFGDGVDIVQWV-NKMTNSTKEGVSNILDERLSSVPLHDVIHVFCVAMACVEEHSVERPTMREVVQMLSD
Q19AV8________________ADSMSAIAGSYGYIAPEYAYTLKVNEKSDIYSFGVVILELVTGRRPVDPEFGENKDLVKWLCNKI--EKKNGLHEVLDPKLVDCFKEEMTMVMRVGLLCTSVLPINRPSMRRVVEMLQE

SNPs (tot: 3)

Position	A %	G %	T %	Probability
221		80	20	0.995493
222		80	20	0.995493
241	25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain