SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene484

Length: 349 nt

UniGene Fasta

>biog3_v1.0_unigene484
AGTCCAAATAAAAATCACAGCATTAAGAGAGTACAGGGTTTGCGAGCGAATGGAAGCACAACCCCCACAAACCGTCGCCTTTCAATGGGAGGTGCCATGATTTCAGGAAATTTTGATCTTACTCCTCGGGTAAATGGGATCACTCCACGACATAATGGAATTGGCAAGGATGGCAGAAGGCGGCCTGCAGCACCATTGAATTATGTTGCAATATGTAAAGACGATACAGTCTCGCTTCCATCTGTAGCTGGGTCTGAGTTGGGTTCTCCTAGGCTGTATGACTGAAATTTGAGACAAATATGATGGGTGAGCTGAACTGGAAGTAATCATTCAGAGAAGGATCAAAGAT

Ace file of the UniGene biog3_v1.0_unigene484

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27843	3/4

Source	Descriptions	Term	Type	Identity
AutoFact	PLE, putative n=1 Tax=Ricinus communis RepID=B9S7E4_RICCO	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	microtubule-associated protein 65-7	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	microtubule nucleation	GO:0007020	Biological Process	75%
Blast2go	positive regulation of microtubule polymerization	GO:0031116	Biological Process	75%
Blast2go	microtubule binding	GO:0008017	Molecular Function	75%
Blast2go	mitochondrion	GO:0005739	Cellular Component	75%
Blast2go	plastid	GO:0009536	Cellular Component	75%
Blast2go	preprophase band	GO:0009574	Cellular Component	75%
Blast2go	phragmoplast	GO:0009524	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF296	IPR005175	-	-
Sma3	Microtubule-associated protein, MAP65/ASE1-type	IPR007145	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC28

Fln msg: your sequence is shorter than subject: 95 - 596

Fln protein: SPNKNHSIKRVQGLRANGSTTPTNRRLSMGGAMISGNFDLTPRVNGITPRHNGIGKDGRRRPAAPLNYVAICKDDTVSLPSVAGSELGSPRLYD*

Protein Length: 96

Fln nts: AGTCCAAATAAAAATCACAGCATTAAGAGAGTACAGGGTTTGCGAGCGAATGGAAGCACAACCCCCACAAACCGTCGCCTTTCAATGGGAGGTGCCATGATTTCAGGAAATTTTGATCTTACTCCTCGGGTAAATGGGATCACTCCACGACATAATGGAATTGGCAAGGATGGCAGAAGGCGGCCTGCAGCACCATTGAATTATGTTGCAATATGTAAAGACGATACAGTCTCGCTTCCATCTGTAGCTGGGTCTGAGTTGGGTTCTCCTAGGCTGTATGACTGA___AATTTGAGACAAATATGATGGGTGAGCTGAACTGGAAGTAATCATTCAGAGAAGGATCAAAGAT

Fln Alignment:

Contig484___SPNKNHSIKRVQGLRANGST---TPTNRRLSMGGAMISGNFDLTPRVNGITPRHNGIG--KDGRR---RPAAPLNYVAICKDDTVSLPSVAGSELGSP
D5AC28________________TPHRQLSTKRSTGLRANGNSVDATPLNRRLSLGVQQTG--------MNGVNPARQGLSVQRDGKREHNRSMIPRNYFSLSKEDSASQPSANGSTVSSP

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
122	25	75			0.996473
125		75	25		0.996473
149	20		80		0.995493
151		80		20	0.995493
152	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain