SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene454

Length: 479 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene454
TATCATATGGATCTTCTTATAGGGGAGAGATATGGAATTAAATCTGCCATAAGAGCAGAGAAGAAAAGGTTGCAAGATAGCTTGGAGATGCAAAGGTTGGAAATCTTGTCTGAGGCAGAGAGAAAGAGGATTTTACATGATGATCAGAATACTTTTGCAGCTGCTATGGCATCCGAAGGAACATCTAAGGAACTGAGAGCAAATGACCCACTGATTTTCCCAGAAAGCACAAGTGCAGATCATGCCCCAATGAATATAGCCAGCTGCAAAGACAGTACTCTGATTCTCCAGAACAGTAATCAGGCACAGTTTTGTGGCTCGGGATTGATTGGAGTGCCTGAGCACAGCAGTGAAAGCGATGAAAGGAAAGCTGATACGAATAAGCAGAAAAGGAGGCGGTCCAAGGAGCCTGGAGAGGATGGGGAGGACAGGCCTAGAGAGCATCCTTTCATTGTCACTGAACCAGGAGAACTGGCAAG

Ace file of the UniGene biog3_v1.0_unigene454 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6286	5/6

Source	Descriptions	Term	Type	Identity
AutoFact	Floricaula/leafy-like protein FL1 n=2 Tax=Pinaceae RepID=NEED_PINRA	-	-	94%
FL-Next	sp=Floricaula/leafy-like protein FL1; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	100%
Blast2go	needly-like protein	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	multicellular organismal development	GO:0007275	Biological Process	77%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	77%
Blast2go	DNA binding	GO:0003677	Molecular Function	77%
Blast2go	nucleus	GO:0005634	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Floricaula/leafy protein	IPR002910	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: O04407

Fln msg: Distance to subject end: 144 aas, your sequence is shorter than subject: 159 - 404

Fln protein: YHMDLLIGERYGIKSAIRAEKKRLQDSLEMQRLEILSEAERKRILHDDQNTFAAAMASEGTSKELRANDPLIFPESTSADHAPMNIASCKDSTLILQNSNQAQFCGSGLIGVPEHSSESDERKADTNKQKRRRSKEPGEDGEDRPREHPFIVTEPGELA

Protein Length: 160

Fln nts: TATCATATGGATCTTCTTATAGGGGAGAGATATGGAATTAAATCTGCCATAAGAGCAGAGAAGAAAAGGTTGCAAGATAGCTTGGAGATGCAAAGGTTGGAAATCTTGTCTGAGGCAGAGAGAAAGAGGATTTTACATGATGATCAGAATACTTTTGCAGCTGCTATGGCATCCGAAGGAACATCTAAGGAACTGAGAGCAAATGACCCACTGATTTTCCCAGAAAGCACAAGTGCAGATCATGCCCCAATGAATATAGCCAGCTGCAAAGACAGTACTCTGATTCTCCAGAACAGTAATCAGGCACAGTTTTGTGGCTCGGGATTGATTGGAGTGCCTGAGCACAGCAGTGAAAGCGATGAAAGGAAAGCTGATACGAATAAGCAGAAAAGGAGGCGGTCCAAGGAGCCTGGAGAGGATGGGGAGGACAGGCCTAGAGAGCATCCTTTCATTGTCACTGAACCAGGAGAACTGGCAAG

Fln Alignment:

Contig454___YHMDLLIGERYGIKSAIRAEKKRLQDSLEMQRLEILSEAERKRILHDDQNTFAAAMASEGTSKELRANDPLIFPESTSADHAPMNIASCKDSTLILQNSNQAQFCGSGLIGVPEHSSESDERKADTNKQKRRRSKEPGEDGEDRPREHPFIVTEPGELA
O04407________________YHMDLLIGERYGIKSAIRAEKKRLQDSLEMQRLEILSEAERKRILHDDQNTFAAAMASEGTSKELRANDPLIFPESTSADHAPMNIASCKDSTLILQNSNQAQFCGSGLIGVPEHSSESDERKADTNKQKRRRSKEPGEDGEDRPREHPFIVTEPGELA

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
126		33		66	1.0
244	20		80		0.995493
270			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain