SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene449

Length: 800 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene449

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13217	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] sp\|Q9FMS5.1\|MS1_ARATH RecName: Full=PHD finger protein MALE STERILITY 1 dbj\|BAB08324.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED93002.1\| RING/FYVE/PHD zinc finger-containing	-	-	34%
FL-Next	sp=PHD finger protein MALE STERILITY 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	39%
Blast2go	dna binding	-	-	57%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	57%
Blast2go	pollen development	GO:0009555	Biological Process	57%
Blast2go	anatomical structure morphogenesis	GO:0009653	Biological Process	57%
Blast2go	reproductive process	GO:0022414	Biological Process	57%
Blast2go	binding	GO:0005488	Molecular Function	57%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	57%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, PHD-type	IPR001965	-	0.0	-
Sma3	Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted	IPR002036	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FMS5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 164 aas, your sequence is shorter than subject: 266 - 672

Fln protein: M*FGRGCYGVTQQMYSKAIEALRGVPLSIMLQHFQQCVDHGELVSIVALYQRMSGSVALQTVGNLMSFMMELKVRMPLKSRAENAPLPHAVDTPCRWSARRLELATQVVVEALKTTSAHKWVPRQDVRDAARAYIGDTGLLDFVLKSLANRVVGGHIVRRAVNPSTKVLEYCIQDLSLARPSCPAAAGPAIVEKISPKDIAKHIEYIYRLVLERYEPAADNNSTLTAIPTASRIILDTKHFVKDYRGEMTRRGAANQWGFDDDEIH

Protein Length: 267

Fln nts: AATGTAGTTTGGGCGAGGTTGCTATGGAGTGACCCAGCAAATGTACAGCAAAGCCATTGAGGCGCTTCGCGGAGTGCCGCTGTCCATAATGCTGCAGCATTTTCAGCAGTGTGTGGACCACGGGGAACTTGTCTCCATCGTTGCCTTGTATCAGAGAATGAGCGGGAGCGTTGCCCTGCAGACTGTCGGGAATCTGATGAGCTTCATGATGGAATTGAAGGTTCGCATGCCTTTAAAATCCCGTGCTGAGAACGCGCCACTGCCTCATGCTGTAGACACGCCTTGTCGGTGGTCGGCGAGGAGACTCGAACTCGCCACACAGGTTGTAGTCGAAGCTTTGAAAACGACGAGTGCCCACAAATGGGTTCCTCGACAGGACGTCAGAGATGCAGCAAGGGCTTATATAGGTGACACCGGCTTGTTGGATTTTGTGCTTAAATCGTTGGCAAATCGCGTGGTTGGAGGTCACATTGTGCGCAGGGCTGTGAATCCCAGCACCAAAGTCCTGGAATACTGCATACAGGATCTCAGCCTAGCTCGTCCGAGCTGTCCGGCCGCCGCTGGGCCAGCGATTGTCGAGAAGATCAGTCCGAAAGATATAGCTAAACACATTGAGTACATATACAGGCTTGTCCTGGAAAGATATGAGCCTGCGGCCGACAATAACAGCACGCTTACGGCCATTCCGACAGCCAGCCGAATAATTTTGGACACCAAGCACTTTGTGAAGGACTACAGAGGAGAAATGACGAGGAGAGGCGCCGCCAATCAATGGGGTTTCGACGACGACGAGATACATT

Fln Alignment:

Contig449___FGRGCYGVTQQMYSKAIEALRGVPLSIMLQHFQQCVDHGELVSIVALYQRMSGSVALQTVGNLMSFMMELKVRMPLKSRAENA--PLPHAVDTPCRWSARRLELATQVVVEALKTTSAHKWVPRQDVRDAARAYIGDTGLLDFVLKSLANRVVGGHIVRRAVNPSTKVLEYCIQDLSLARPSC---------PAAAGPAIV---EKISPKDIAKHIEYIYRLVLERYEPA-ADNNSTLTAIPTASRIILDTKHFVKDY
Q9FMS5________________FGSGTYGVTQKIYEKALESVRNIPLCLLNHHLTSL--NRETPILLSKYQSLS-TEPLITLSDLFRFMLHLHSRLPRDNYMSNSRNQIISIDSTNCRWSQKRIQMAIKVVIESLKRVE-YRWISRQEVRDAARNYIGDTGLLDFVLKSLGNQVVGNYLVRRSLNPVKKVLEYSLEDISNLLPSSNNELITLQNQNSMGKMATNGHNKITRGQVMKDMFYFYKHILMDYKGVLGPIGGILNQIGMASRAILDAKYFIKEY

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
199	33		66		0.997452
203		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
781	792	CGA CGA CGA CGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain