SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene428

Length: 1355 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene428 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6170	55/56

Source	Descriptions	Term	Type	Identity
AutoFact	adenine nucleotide transporter 1 [Arabidopsis thaliana] gb\|AAK25878.1\|AF360168_1 putative carrier protein [Arabidopsis thaliana] gb\|AAL06538.1\|AF412085_1 AT4g01100/F2N1_16 [Arabidopsis thaliana] gb\|AAB61037.1\| similar to mitochondrial carrier family [Arab	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	grave disease carrier	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	aerobic respiration	GO:0009060	Biological Process	91%
Blast2go	AMP transport	GO:0080121	Biological Process	91%
Blast2go	ADP transport	GO:0015866	Biological Process	91%
Blast2go	mitochondrial transport	GO:0006839	Biological Process	91%
Blast2go	ATP transport	GO:0015867	Biological Process	91%
Blast2go	AMP transmembrane transporter activity	GO:0080122	Molecular Function	91%
Blast2go	binding	GO:0005488	Molecular Function	91%
Blast2go	ATP transmembrane transporter activity	GO:0005347	Molecular Function	91%
Blast2go	ADP transmembrane transporter activity	GO:0015217	Molecular Function	91%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	91%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	91%
Blast2go	integral to membrane	GO:0016021	Cellular Component	91%
Blast2go	plastid	GO:0009536	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3		IPR001993	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADX1

Fln msg: atg_distance in limit (1-15): atg_distance = 1,

Fln protein: MASDDVVGGSNAVAFRQTPPLYAESKEAAVSTLVNLAEEAKLASEGVKAPGHAVLTVCKSLFAGGVAGGVSRTAVAPLERLKILLQVQNPLHRKYNGTIQGLRYIWNTEGIRGLFKGNGTNCARIVPNSAVKFYSYEQASSAILWCYRRQTGNEDAELTPVLRLGAGACAGIIAMSATYPMDMVRGRLTVQTENSPYQYRGMFHALATVLREEGPRALYKGWFPSVIGVIPYVGLNFSVYESLKDWLVKSRPFGLVEGEDLGVVTKLACGAAAGTVGQTVAYPLDVIRRRMQMVGWKDASSVVTGDGRSKAPLQYSGMVDAFRQTVRNEGFGALYRGLVPNSVKVVPSISIAFVTYEVLKDLLDVQLKIKD*

Protein Length: 373

Fln nts: _-_ATGGCTTCCGATGATGTAGTGGGAGGGAGCAACGCAGTCGCATTCCGCCAAACTCCTCCGCTCTATGCAGAAAGCAAAGAGGCCGCTGTCTCCACGTTAGTGAATCTAGCCGAGGAAGCAAAGTTAGCGAGCGAAGGCGTGAAGGCACCTGGACATGCTGTTCTTACTGTCTGTAAATCACTATTTGCTGGTGGCGTAGCAGGTGGAGTGTCTCGTACAGCTGTAGCCCCTTTAGAGCGACTTAAAATTCTACTTCAGGTTCAAAATCCTCTTCACCGCAAATACAATGGTACAATTCAAGGATTACGCTATATATGGAATACTGAAGGAATTCGTGGACTTTTTAAAGGAAATGGTACCAATTGTGCCAGGATAGTACCAAATTCTGCAGTAAAATTTTACAGCTATGAACAGGCTTCAAGTGCAATTCTCTGGTGTTATAGGCGACAGACAGGCAATGAAGATGCAGAGCTAACACCAGTTCTACGTTTAGGAGCAGGAGCATGTGCAGGAATAATTGCTATGTCTGCAACATATCCAATGGACATGGTTCGCGGAAGGTTAACTGTACAGACAGAAAACTCACCTTATCAGTACCGTGGAATGTTCCATGCATTGGCAACTGTCTTGCGTGAGGAAGGTCCAAGAGCTTTATACAAAGGCTGGTTTCCTTCTGTGATTGGAGTGATTCCATATGTCGGGCTGAATTTCTCAGTTTACGAGTCTCTGAAGGACTGGTTAGTCAAATCCAGACCCTTCGGTCTTGTTGAGGGGGAAGATTTGGGCGTGGTCACTAAATTGGCTTGTGGAGCTGCAGCAGGAACTGTTGGACAAACTGTAGCTTATCCTCTTGATGTAATACGGAGAAGAATGCAAATGGTTGGGTGGAAAGATGCTTCTTCTGTTGTAACTGGAGATGGGAGAAGCAAAGCTCCACTTCAATACTCTGGTATGGTTGATGCTTTCAGACAAACTGTAAGGAATGAAGGTTTTGGTGCATTGTATAGGGGTTTGGTTCCGAATTCAGTGAAGGTGGTGCCGTCAATATCAATTGCTTTTGTGACATATGAAGTTCTGAAGGATCTTCTGGATGTGCAATTGAAAATTAAAGATTAA___AGAAATTTTATTTTCATGTGGTGATATTTGGAGAGCGTTCTTTGATTTATTCCAAGGAATAAACGATCTTCATTATTGTTTATTTGTGTAAAATGGGGCCGTTATTTTTATTAATGGCTGTATCTATATCTTTGAAGGCATATCCGATCATTAGATTGTAGAAGTTTAAAATCCCCAAAGATCAATAAATCTTGTAATTGAGACATTGGAGTTAGCACATTCCAGCAGTTTTGCTTTGA

Fln Alignment:

Contig428___MASDDVVGGSNAVAFRQTPPLYAESKEAAVSTLVNLAEEAKLASEGVKAPGHAVLTVCKSLFAGGVAGGVSRTAVAPLERLKILLQVQNPLHRKYNGTIQGLRYIWNTEGIRGLFKGNGTNCARIVPNSAVKFYSYEQASSAILWCYRRQTGNEDAELTPVLRLGAGACAGIIAMSATYPMDMVRGRLTVQTENSPYQYRGMFHALATVLREEGPRALYKGWFPSVIGVIPYVGLNFSVYESLKDWLVKSRPFGLVEGEDLGVVTKLXXXXXXXXXXXXXAYPLDVIRRRMQMVGWKDASSVVTGDGRSKAPLQYSGMVDAFRQTVRNEGFGALYRGLVPNSVKVVPSISIAFVTYEVLKDLLDVQLKIKD
D5ADX1________________MASDDVVGGSNTVAFRQTPPLYAESKEAAVSTFVNLAEEAKLASEGVKAPGHAVLTICKSLFAGGVAGGVSRSAVAPLERLKILLQVQNPLHRKYNGTIQGLRYIWNTEGLRGLFKGNGTNCARIVPNSAVKFYSYEQASRAILWFYRQQTGNEDAELTPVLRLGAGACAGIIAMSATYPMDMVRGRLTVQTENSPYQYRGMFHALSTVLREEGPRALYKGWFPSVIGVVPYVGLNFAVYESLKDWLVKSRPFGLVEGEDLSMVTKLACGAAAGTVGQTVAYPLDVIRRRMQMVGWKDASSIVTGDGRSKAPLQYSGMVDAFRQTVRNEGFGALYRGLVPNSVKVVPSIAIAFVTYEALRDLLNVELRISD

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
317	33		66		0.997452
319		66		33	0.997452
321			66	33	0.997452
418	20			80	0.995493
421	80			20	0.995493
487	20	80			0.995493
490			20	80	0.995493
491		80		20	0.995493
495	16			83	0.994512
496	16	83			0.994512
497		83		16	0.994512
548	11		88		0.923564
549		88		11	0.923564
550			11	88	0.923564
551		88		11	0.923564
552	10	90			0.90298
554		90	10		0.90298
555	90			10	0.90298
933	12			87	0.999964
1081	11		88		0.999952
1083	12		87		0.999964
1084			87	12	0.999964
1141	15			84	0.999986
1142			84	15	0.999986
1193			90	10	0.90298
1265	14		85		0.993533
1266		14		85	0.993533
1267	14		85		0.993533
1268			85	14	0.993533
1269	85			14	0.993533
1298		25	75		0.996473
1300			75	25	0.996473
1301		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain