SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene424

Length: 354 nt

UniGene Fasta

>biog3_v1.0_unigene424
AATGTATGAATGGCAAGATTGGTCAGAGCAACTGCCTTCTGATGATGACTCTTTGGTTGCCAGTTGGACTAACCTCCTTGTTGTTGATAGTGGTGAAGAACCTGGCTTGAATACAATATATCCGGCTGCAACGTTGCCAAGTACAGGTTCTGTTTCACAACTCCAGCAGGATCTTTGTGCCCCTGCTGGAGGAAATCAAGTTGCTTCAAGCTCCACATCATCTGGAACTGGGACTTCTAACAAGCCACGGTTGAGATGGACTCCAGAACTCCATGAGAGATTTATCGAAGCTGTTAAGAAGCTACATGGTGCTGAGAAAGCAACTCCAAAAGGTGTTTTGAAGCTCATGACATT

Ace file of the UniGene biog3_v1.0_unigene424

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2362	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana] ref\|NP_974298.1\| myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana] gb\|AAK92826.1\| unknown protein [Arabidopsis thaliana] gb\|AAM20308.1\| unknown protein	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	two-component response regulator arr	-	-	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	59%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	59%

Source	InterPros	Term	Type	Identity
Sma3		IPR012287	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3		IPR014778	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKH4

Fln msg: Distance to subject end: 232 aas, your sequence is shorter than subject: 117 - 565

Fln protein: MYEWQDWSEQLPSDDDSLVASWTNLLVVDSGEEPGLNTIYPAATLPSTGSVSQLQQDLCAPAGGNQVASSSTSSGTGTSNKPRLRWTPELHERFIEAVKKLHGAEKATPKGVLKLMT

Protein Length: 118

Fln nts: AATGTATGAATGGCAAGATTGGTCAGAGCAACTGCCTTCTGATGATGACTCTTTGGTTGCCAGTTGGACTAACCTCCTTGTTGTTGATAGTGGTGAAGAACCTGGCTTGAATACAATATATCCGGCTGCAACGTTGCCAAGTACAGGTTCTGTTTCACAACTCCAGCAGGATCTTTGTGCCCCTGCTGGAGGAAATCAAGTTGCTTCAAGCTCCACATCATCTGGAACTGGGACTTCTAACAAGCCACGGTTGAGATGGACTCCAGAACTCCATGAGAGATTTATCGAAGCTGTTAAGAAGCTACATGGTGCTGAGAAAGCAACTCCAAAAGGTGTTTTGAAGCTCATGACATT

Fln Alignment:

Contig424___EWQDWSEQLPSDDDSLVASWTNLLVVDSGEEPGLNTIYPAATLPSTGSVSQLQQDLCAPAGGNQVAXXXXXXXXXXXNKPRLRWTPELHERFIEAVKKLHGAEKATPKGVLKLM
B8LKH4________________EWQDWPEQLPSDDDSLVANWTDLLVVESGEDPGLNTIYPAAKLPTTGSISQLHQGFCAPAGGNQFASSSTSSGTGTSNKQRLRWTPELHERFIEAVKKLHGAEKATPKGVLKLM

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
126		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain