SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene423

Length: 1159 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene423

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17202	1/142
SustainPine v2.0	sp_v2.0_unigene26334	80/142
SustainPine v2.0	sp_v2.0_unigene60453	47/142
SustainPine v2.0	sp_v2.0_unigene60565	14/142

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal S4 protein [Glycine max] gb\|ACU21252.1\| unknown [Glycine max]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	94%
Blast2go	nucleolus	GO:0005730	Cellular Component	94%
Blast2go	plasma membrane	GO:0005886	Cellular Component	94%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	94%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	94%
Blast2go	chloroplast	GO:0009507	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Sma3	KOW	IPR005824	-	-
Sma3	Ribosomal protein S4e	IPR000876	-	-
Sma3	Ribosomal protein S4e, central	IPR013845	-	-
Sma3	Ribosomal protein S4e, N-terminal	IPR013843	-	-
Sma3	Ribosomal protein S4e, N-terminal, conserved site	IPR018199	-	-
Sma3	RNA-binding S4 domain	IPR002942	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKK9

Fln msg:

Fln protein: MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSPGPHKGRECLPLVVLLRNRLKYALTYREVIAIVMQRLISVDGKVRTDKCYPAGFMDVLSIAKTNENFRLLYDAKGRFRLHSIKDEEAKYKLCKVRSVQFGDKGIPYLNTYDGRTIRYPDPLVKANDTIKIDLETGKIKEFIKFDVGNVVMVTGGRNRGRVGTIKHREKHKGSFEIIHVQDAAGQEFATRQGNVFTIGKGTKPWVSLPKGKGVKLSIIDEARKRNAAATAAA*

Protein Length: 265

Fln nts: GAGGTTAAGTTTAGAGGTAAAGCGCAACTAGGGTTTGGTAAAGGGTATAGGGTTTCAAAGAGTTAAGCCCGTGTTTGAACCCTCAAGATCCTTGATTGGCTGGGTTCATTGATTTCTGCTCCTCCTACTGAATCGATCGTAGAGGTCTTTGCCTCTGTAATTTGATTTGCAGAAGGTGCCTGGCAGGGTTTAAGGATTTCTCATTCTCCTCTTCTTGAGCCGATCGTAGAGACATC_-_ATGGCTCGTGGATTGAAGAAACATTTAAAGAGGCTCAATGCTCCCAGGCATTGGATGCTTGACAAACTTGGTGGTGCTTTTGCACCAAAACCATCTCCTGGTCCTCACAAGGGCAGGGAATGCCTGCCGCTTGTGGTTCTTCTTAGGAACAGGCTGAAGTATGCCCTCACATACCGTGAAGTCATAGCCATTGTAATGCAGAGACTTATTTCTGTTGATGGAAAAGTGAGGACAGACAAATGCTATCCTGCAGGGTTTATGGATGTCCTGTCGATTGCAAAAACAAATGAGAATTTTAGGCTTCTTTATGATGCAAAGGGTCGTTTCCGCTTGCATTCAATCAAAGATGAAGAAGCAAAGTATAAACTTTGCAAGGTTCGTTCTGTACAATTTGGAGATAAGGGTATCCCTTACCTCAACACTTATGATGGACGCACAATTAGGTACCCAGATCCATTGGTCAAGGCCAATGATACAATCAAGATTGATCTAGAGACAGGCAAAATCAAGGAGTTTATCAAGTTTGATGTTGGTAATGTTGTAATGGTTACTGGAGGCCGTAACAGAGGTCGTGTTGGAACCATTAAGCACAGAGAAAAGCATAAGGGTAGCTTTGAGATTATTCATGTGCAAGATGCTGCTGGGCAGGAATTTGCCACCCGACAGGGTAATGTGTTCACTATTGGAAAAGGCACAAAGCCTTGGGTTTCTTTACCCAAGGGTAAAGGTGTCAAGCTGTCCATCATTGATGAGGCCAGGAAACGCAATGCAGCTGCAACTGCTGCAGCATAA___GTTTTGTTCATTAGAAAACTCGATAGTTTTTATGGTCAGAATTTGTTAGTTTACTCTGACTATTATCGGAAACTTTGTTGGGAAAACTTAGGAGCTACCATTGTTTTACTTCTGAACGAAAAGGGTTTTAT

Fln Alignment:

Contig423___MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSPGPHKGRECLPLVVLLRNRLKYALTYREVIAIVMQRLISVDGKVRTDKCYPAGFMDVLSIAKTNENFRLLYDAKGRFRLHSIKDEEAKYKLCKVRSVQFGDKGIPYLNTYDGRTIRYPDPLVKANDTIKIDLETGKIKEFIKFDXXXXXXXXXXXXXXXXXXIKHREKHKGSFEIIHVQDAAGQEFATRQGNVFTIGKGTKPWVSLPKGKGVKLSIIDEARKRN
A9NKK9________________MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSPGPHKGRECLPLVVLIRNRLKYALTYREVIAIVMQRLISVDGKVRTDKCYPAGFMDVLSIAKTNENFRLLYDAKGRFRLHSIKDEEAKYKLCKVRSVQFGDKGIPYLNTYDGRTIRYPDPLVKANDTIKIDLETGKIKEFIKFDVGNVVMVTGGRNRGRVGVIKHREKHKGSFEIIHVQDAAGQEFATRQGNVFTIGKGTKPWVSLPKGKGVKLSIIEEARKRH

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
506			80	20	0.995493
689		11		88	1.0
696	11		88		1.0
698		90	9		1.0
716		88		11	1.0
720	88	11			1.0
725		11		88	1.0
734	81		18		1.0
740	79		19	1	1.0
745	80			20	1.0
752		20		79	1.0
755	22	76			1.0
777	20		77	1	1.0
789	1		92	5	0.999988
797		19		80	1.0
800		80		17	1.0
802		4	95		0.996252
804		6	88		0.999989
805	8		86	4	1.0
807	2	92		4	0.987114
816	83		16		1.0
817	2	80		16	1.0
829			86	6	0.995852
831		15	80		1.0
833	80	3		15	1.0
834	84			15	1.0
839		9		90	0.999872
857	5	17		76	1.0
863		15		84	0.999986
879			90	10	0.90298
892	12	87			0.992554
895		87		12	0.992554
896		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain