SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene420

Length: 510 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene420
AATGTAACAGGCCAACAAACTGAAGCTTGTGTCACTGTCAATGTCGAGAAGTCTCCTGGACTATTTACGATGCCTGTAGTTTCATTTCCTGTTGAAGTTACTACTGCAGATGATAGCGAATTTGTTGAGGCCAAAGATACAAAGAAGAACAGGAAGAGGACACCAAAAGGAAAGAGTGCCCCAGGTAAAATACCTATGACTGCTTCTTTGGAACCTCCTGTATCATCTGTTCAACTCGAGAAAAGCAAAAGCTCTCGTCAACTTCAGCAGGAAAAGGAAGTATTACCTGCTCCACCTGCTGGTCCATCTCTAGGAGATTTCCTGCCATGGAAAGCAGAATCTTCAAGCTCTCCACCAGCTCCAGCTTGGTCAGTTGATACACTTAAGCAGGCAAAAACTACATCACTGAGAGATATTCAGAAAGAGCAGGAAAGAAAACTCTCAACTTTGGTCAACTCCCAACCACAGGTTGCTGCTGCACCCAAAGTACAGACAAATCGGAGCTACATT

Ace file of the UniGene biog3_v1.0_unigene420 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11115	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	GYF domain-containing protein [Arabidopsis thaliana] dbj\|BAB09197.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED94891.1\| GYF domain-containing protein [Arabidopsis thaliana]	-	-	39%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	55%
Blast2go	gyf domain-containing protein	-	-	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Sma3	GYF	IPR003169	-	0.0	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9NFD7

Fln msg: Distance to subject end: 262 aas, your sequence is shorter than subject: 170 - 885

Fln protein: NVTGQQTEACVTVNVEKSPGLFTMPVVSFPVEVTTADDSEFVEAKDTKKNRKRTPKGKSAPGKIPMTASLEPPVSSVQLEKSKSSRQLQQEKEVLPAPPAGPSLGDFLPWKAESSSSPPAPAWSVDTLKQAKTTSLRDIQKEQERKLSTLVNSQPQVAAAPKVQTNRSYI

Protein Length: 171

Fln nts: AATGTAACAGGCCAACAAACTGAAGCTTGTGTCACTGTCAATGTCGAGAAGTCTCCTGGACTATTTACGATGCCTGTAGTTTCATTTCCTGTTGAAGTTACTACTGCAGATGATAGCGAATTTGTTGAGGCCAAAGATACAAAGAAGAACAGGAAGAGGACACCAAAAGGAAAGAGTGCCCCAGGTAAAATACCTATGACTGCTTCTTTGGAACCTCCTGTATCATCTGTTCAACTCGAGAAAAGCAAAAGCTCTCGTCAACTTCAGCAGGAAAAGGAAGTATTACCTGCTCCACCTGCTGGTCCATCTCTAGGAGATTTCCTGCCATGGAAAGCAGAATCTTCAAGCTCTCCACCAGCTCCAGCTTGGTCAGTTGATACACTTAAGCAGGCAAAAACTACATCACTGAGAGATATTCAGAAAGAGCAGGAAAGAAAACTCTCAACTTTGGTCAACTCCCAACCACAGGTTGCTGCTGCACCCAAAGTACAGACAAATCGGAGCTACATT

Fln Alignment:

Contig420___EKSPGLFTMPVVSFPVEVTTADDSEFVEAKDTKKNRKRTPKGKSAPGKIPMTA-SLEPPVSSVQLEKSKSSRQLQQEKEVLPAPPAGPSLGDFLPWKXXXXXXXXXXXXSVDTLKQAKTTSLRDIQKEQERKLSTLVNSQPQ
B9NFD7________________ESLSGLTTQPVATNSLE--SIDDGNFIEAKDTKKNRKRSAKAKGAGAKVVVPIPSTEMAVSSSPIEKGKGSRSVQQEKEVLPAIPSGPSLGDFVFWKGEPANHSPSPAWSADSKKLPKPTSLRDIQKEQEKKVS---SAQPQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain