SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene416

Length: 2162 nt

UniGene Fasta

>biog3_v1.0_unigene416
TCTTCTGATCGGTCTGCCTCTAAATTTGGCGGAGATATTCGCCTCCAATTTGGTACGCTTTGCAGGAAGAAGAAGAACCGGGGAGAAAATGCAGGCTATTGCAGGAAGCAAAGTTTTCTCGCCTTTGGATGGGCGCAATCGAGTCCAGGGATGTAGAACCTTTTGCAGCGGATCATCGGCCAGGCCACTAAATTTGGCGGTGACAGAGGGACCTTCGGCTAAAATTTCGACGGGCGCAGTTGGTTTGAAATCTTCAGTGTGGGGATCACGAAAGATATGCATGGAAAAGAGAATAAATTTGGGCTTGACGAACAAGCGTGGCGGTTCTTCTAAATTTCGGGCCAAAGCTTACGATGGCAATTTGGAGTCTCAGACAGCATCTGGAAAATCTAAATCTTCTGGTACAGTATTGCCATATGTTGGTGTTGCATGTTTGGGAGCCATTTTATTTGGTTACCATCTTGGTGTAGTAAATGGAGCACTTGAATATCTTGCAAGGGATCTTGGAATTGCTGACAATACTGTTTTACAAGGATGGGTGGTTAGCACAACACTTGCAGGTGCCACTGTTGGATCGTTTACTGGAGGTGCATTGGCTGATAAACTTGGCAGGAAGAGGTCATTTCAACTTGATGCCATACCTCTTGTAGTTGGTGCTATTCTAAGTGCCACAGCACAAAGTGTGCAAGCAATGATTATTGGTCGGTTGCTTGCTGGTATTGGTATTGGCATCTCTTCCTCTTTGGTGCCACTTTATATTTCAGAGATATCACCCACTGAGATCCGGGGTGCTCTTGGGTCTGTGAATCAACTTTTCATTTGTGTTGGAATATTGCTTGCTCTAGTGGCAGGATTACCCTTGGCTGGAAATCCATTATGGTGGCGGAACATGTTCACCATTGCTACTGTGCCTGCAGTACTAATGGCACTGGGAATGTTATTTTCCCCTGAAAGTCCTCGTTGGCTTTTCAAGCAAGGCAAAGTAGTTGAAGCTGAATCAGCGATAAAGACCCTGTGGGGCAAGGGCAAAGTTGAAGAAGTTATGATTGAATTGAGAGCAAGTAGCTCAGGTTCTGTAGAGGAGGATGCTGGTTGGTTAGATCTTTTCAGTAAACGTTACTGGAAAGTGGTCAGTGTTGGAGCAGCACTTTTCCTGTTTCAGCAACTTGCTGGCATAAATGCGGTTGTTTATTACTCCACTAATGTGTTTCGGAGTGCCGGTATTGCTTCTGATGTTGCAGCAAGTGCTCTTGTGGGGGCTTCAAATGTCATTGGTACAGCTGTGGCATCTTCTTTAATGGACAAGCAGGGAAGGAAGAGCTTGCTTATAACGAGTTTTTCGGGGATGGCTGCTTCTATGTTGCTGCTTTCTCTGTCCCTTTCCTGGAACGCATTGGCACGATACTCGGGCATTCTTGCTGTTCTCGGGACTGTCTTGTACGTCGTTTCATTTTCCTTGGGAGCTGGTCCTGTACCAGCTTTACTTCTACCTGAGATTTTTGCGTCACGCATCCGTGCCAAGGCTGTTTCTCTGTCTCTTGGAATGCACTGGGTTTCAAACTTCATTATTGGTCTATATTTCCTCAGTGTTTGTAATAAGTTTGGAATCAGCAAAGTTTATTTAGGATTTGCTACTGTCTGCCTCCTTGCTGTCATCTATGTGGCGAATAATGTAGTGGAAACTAAAGGTCGCTCACTGGAGGAGATTGAGCGTGCCCTCAGTGCTGCAACTTAGGTTATGCGGGGAAGACCTATAGTCTTATGAAGGGTGATAGAGAATTAGAGACACTGGCAGTGTTCCACAGATTTAAAATTGCTACCAGTGGGTAAGAGGGTCATTGTGTAGGGTGATTTGAGCAGGTTTAGTCTGCAGTAACCACCAGTGTAGTTCAGGGAGTTGCTTGAATAAGGGGCAAGTTCCCCACGAGTGTATCGGTTGCATGCAGCCTGATTTTGACAATGGTACAATGTAAACACGGGAGCATATGTTAGCTCTGAATTCCGCTTTACCAAATGAGGGAGTTTAAACATTTAAAATGACATCGGAAAAGAAGCTTATTGTTATCCATCATGGATTTTAGAGTAAATGATAAATCCCTCCAGAAATCAAGATTCATATTTTATGCTGGATGTAGAAGTCTCTGTTTTTAATGGAAGTTTTG

Ace file of the UniGene biog3_v1.0_unigene416

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22815	83/84

Source	Descriptions	Term	Type	Identity
AutoFact	Plastid hexose transporter n=1 Tax=Vitis vinifera RepID=Q539E7_VITVI	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	plastidic glucose transporter 4	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	transporter activity	GO:0005215	Molecular Function	0.0	87%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	0.0	87%

Source	InterPros	Term	Type	Identity
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMN4

Fln msg:

Fln protein: MQAIAGSKVFSPLDGRNRVQGCRTFCSGSSARPLNLAVTEGPSAKISTGAVGLKSSVWGSRKICMEKRINLGLTNKRGGSSKFRAKAYDGNLESQTASGKSKSSGTVLPYVGVACLGAILFGYHLGVVNGALEYLARDLGIADNTVLQGWVVSTTLAGATVGSFTGGALADKLGRKRSFQLDAIPLVVGAILSATAQSVQAMIIGRLLAGIGIGISSSLVPLYISEISPTEIRGALGSVNQLFICVGILLALVAGLPLAGNPLWWRNMFTIATVPAVLMALGMLFSPESPRWLFKQGKVVEAESAIKTLWGKGKVEEVMIELRASSSGSVEEDAGWLDLFSKRYWKVVSVGAALFLFQQLAGINAVVYYSTNVFRSAGIASDVAASALVGASNVIGTAVASSLMDKQGRKSLLITSFSGMAASMLLLSLSLSWNALARYSGILAVLGTVLYVVSFSLGAGPVPALLLPEIFASRIRAKAVSLSLGMHWVSNFIIGLYFLSVCNKFGISKVYLGFATVCLLAVIYVANNVVETKGRSLEEIERALSAAT*

Protein Length: 550

Fln nts: TCTTCTGATCGGTCTGCCTCTAAATTTGGCGGAGATATTCGCCTCCAATTTGGTACGCTTTGCAGGAAGAAGAAGAACCGGGGAGAAA_-_ATGCAGGCTATTGCAGGAAGCAAAGTTTTCTCGCCTTTGGATGGGCGCAATCGAGTCCAGGGATGTAGAACCTTTTGCAGCGGATCATCGGCCAGGCCACTAAATTTGGCGGTGACAGAGGGACCTTCGGCTAAAATTTCGACGGGCGCAGTTGGTTTGAAATCTTCAGTGTGGGGATCACGAAAGATATGCATGGAAAAGAGAATAAATTTGGGCTTGACGAACAAGCGTGGCGGTTCTTCTAAATTTCGGGCCAAAGCTTACGATGGCAATTTGGAGTCTCAGACAGCATCTGGAAAATCTAAATCTTCTGGTACAGTATTGCCATATGTTGGTGTTGCATGTTTGGGAGCCATTTTATTTGGTTACCATCTTGGTGTAGTAAATGGAGCACTTGAATATCTTGCAAGGGATCTTGGAATTGCTGACAATACTGTTTTACAAGGATGGGTGGTTAGCACAACACTTGCAGGTGCCACTGTTGGATCGTTTACTGGAGGTGCATTGGCTGATAAACTTGGCAGGAAGAGGTCATTTCAACTTGATGCCATACCTCTTGTAGTTGGTGCTATTCTAAGTGCCACAGCACAAAGTGTGCAAGCAATGATTATTGGTCGGTTGCTTGCTGGTATTGGTATTGGCATCTCTTCCTCTTTGGTGCCACTTTATATTTCAGAGATATCACCCACTGAGATCCGGGGTGCTCTTGGGTCTGTGAATCAACTTTTCATTTGTGTTGGAATATTGCTTGCTCTAGTGGCAGGATTACCCTTGGCTGGAAATCCATTATGGTGGCGGAACATGTTCACCATTGCTACTGTGCCTGCAGTACTAATGGCACTGGGAATGTTATTTTCCCCTGAAAGTCCTCGTTGGCTTTTCAAGCAAGGCAAAGTAGTTGAAGCTGAATCAGCGATAAAGACCCTGTGGGGCAAGGGCAAAGTTGAAGAAGTTATGATTGAATTGAGAGCAAGTAGCTCAGGTTCTGTAGAGGAGGATGCTGGTTGGTTAGATCTTTTCAGTAAACGTTACTGGAAAGTGGTCAGTGTTGGAGCAGCACTTTTCCTGTTTCAGCAACTTGCTGGCATAAATGCGGTTGTTTATTACTCCACTAATGTGTTTCGGAGTGCCGGTATTGCTTCTGATGTTGCAGCAAGTGCTCTTGTGGGGGCTTCAAATGTCATTGGTACAGCTGTGGCATCTTCTTTAATGGACAAGCAGGGAAGGAAGAGCTTGCTTATAACGAGTTTTTCGGGGATGGCTGCTTCTATGTTGCTGCTTTCTCTGTCCCTTTCCTGGAACGCATTGGCACGATACTCGGGCATTCTTGCTGTTCTCGGGACTGTCTTGTACGTCGTTTCATTTTCCTTGGGAGCTGGTCCTGTACCAGCTTTACTTCTACCTGAGATTTTTGCGTCACGCATCCGTGCCAAGGCTGTTTCTCTGTCTCTTGGAATGCACTGGGTTTCAAACTTCATTATTGGTCTATATTTCCTCAGTGTTTGTAATAAGTTTGGAATCAGCAAAGTTTATTTAGGATTTGCTACTGTCTGCCTCCTTGCTGTCATCTATGTGGCGAATAATGTAGTGGAAACTAAAGGTCGCTCACTGGAGGAGATTGAGCGTGCCCTCAGTGCTGCAACTTAG___GTTATGCGGGGAAGACCTATAGTCTTATGAAGGGTGATAGAGAATTAGAGACACTGGCAGTGTTCCACAGATTTAAAATTGCTACCAGTGGGTAAGAGGGTCATTGTGTAGGGTGATTTGAGCAGGTTTAGTCTGCAGTAACCACCAGTGTAGTTCAGGGAGTTGCTTGAATAAGGGGCAAGTTCCCCACGAGTGTATCGGTTGCATGCAGCCTGATTTTGACAATGGTACAATGTAAACACGGGAGCATATGTTAGCTCTGAATTCCGCTTTACCAAATGAGGGAGTTTAAACATTTAAAATGACATCGGAAAAGAAGCTTATTGTTATCCATCATGGATTTTAGAGTAAATGATAAATCCCTCCAGAAATCAAGATTCATATTTTATGCTGGATGTAGAAGTCTCTGTTTTTAATGGAAGTTTTG

Fln Alignment:

Contig416___MQAIAGSKVFSPLDGRNRVQGCRTFCSGSSARPLNLAVTEGPSAKISTGAVGLKSSVWGSRKICMEKRINLGLTNKRGGSSKFRAKAYDGNLESQ-TASGKSKSSGTVLPYVGVACLGAILFGYHLGVVNGALEYLARDLGIADNTVLQGWVVSTTLAGATVGSFTGGALADKLGRKRSFQLDAIPLVVGAILSATAQSVQAMXXXXXXXXXXXXXXXXXVPLYISEISPTEIRGALGSVNQLFICXXXXXXXXXXXXXXXXXXWWRNMFTIATVPAVLMALGMLFSPESPRWLFKQGKVVEAESAIKTLWGKGKVEEVMIELRASSSGSVEEDAGWLDLFSKRYWKVVSVGAALFLFQQLAGINAVVYYSTNVFRSAGIASDVAASALVGASNVIGTAVASSLMDKQGRKSLLITXXXXXXXXXXXXXXXXXXXXXXRYSGILAVLGTVLYVVSFSXXXXXXXXXXXXEIFASRIRAKAVSLSLGMHWVSNFIIGLYFLSVCNKFGISKVYLGFATVCLLAVIYVANNVVETKGRSLEEIERALSAAT
B8LMN4________________MQAIAGSKIFSPLEGRNRVQGWRTFCSGSLTRPLNLSVTEGPSAKILKGAVSLNSSVWGSRQICMEKRMNLGLTNKRGGSSKIRAKAYDGNLESQSTASGKSSSSGTVLPYVGVACLGAILFGYHLGVVNGALEYLAKDLGFADNTVLQGWVVSTTLAGATVGSFTGGALADKLGRKRTFQLDAIPLVIGPFLSATAQSVQAMIIGRLLAGIGIGISSALVPLYISEISPTDIRGALGSVNQLFICVGILLALVAGLPLAANPLWWRSMFTIATVPAVLMALGMLFSPESPRWLFKQGRIVEAESAIKTLWGKGKVEEVMLELRGSSTGSVEEDAGWFDLFSKRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSAGIASDVAASALVSASNVIGTAVASSLMDKQGRKSLLITSFTGMAVSMLLLSLSLSWKALAQYSGTLAVLGTVLYVVSFSLGAGPVPALLLPEIFASRIRAKAVSLSLGMHWVSNFVIGLYFLSVVNKFGISKVYLGFATVCLLAVIYVANNVVETKGRSLEEIERALSAGT

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1940	25		75		1.0
1941	25			75	1.0
1957		12		87	0.992554
1958	12			87	0.992554
2049		83		16	0.994512
2068	33		16		1.0
2069		33		50	1.0
2072		66		33	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
66	77	GAA GAA GAA GAA	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain