SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene368

Length: 1229 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene368

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22952	21/21

Source	Descriptions	Term	Type	Identity
AutoFact	Vacuolar protein sorting-associated protein VPS4, putative n=3 Tax=Spermatophyta RepID=B9SCR4_RICCO	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	vacuolar sorting protein 4b	-	-	92%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	MIT	IPR007330	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2N1

Fln msg: your sequence is shorter than subject: 283 - 439

Fln protein: CFTGRRKPWKAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARDCAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPNNLTEGDFEDLARRTDGFSGSDISVCVKDVLFEPVRKTQDAMFFSKVSTEDGEMWVPCGPRQPGAVQTTMQELAVKGLASKILPPPISKADFDKVLARQRPTVSKHDLEVHERFTKEFGEEG*

Protein Length: 284

Fln nts: AATGTTTCACAGGGAGACGAAAGCCCTGGAAAGCTTTTCTTTTATATGGACCTCCTGGAACTGGAAAGTCATACTTGGCAAAAGCTGTTGCGACCGAAGCAGATTCAACGTTTTTCAGTATTTCTTCTTCAGACCTTGTTTCAAAATGGATGGGTGAAAGTGAGAAGCTTGTTTCTAATCTATTTCAAATGGCTCGGGACTGTGCTCCATCAATCATATTTATTGATGAAATAGACTCCTTATGTGGGCAACGTGGAGAAGGTAATGAGAGTGAAGCTTCTCGACGAATAAAGACAGAACTTTTAGTACAAATGCAGGGTGTAGGAAACAATGATCAGAAAGTTCTTGTATTGGCGGCTACAAATACTCCTTATGCTCTGGACCAGGCTATTAGGAGGCGTTTTGACAAACGAATCTATATTCCTCTACCTGATCTGAAGGCAAGGCAGCATATGTTCAAGGTTCACCTGGGTGACACACCTAACAACCTGACAGAGGGTGACTTTGAGGATCTAGCACGGAGAACAGATGGTTTCTCTGGGTCTGATATTTCTGTTTGTGTGAAAGATGTATTATTTGAACCTGTACGTAAAACTCAAGATGCTATGTTCTTCAGCAAAGTGTCTACCGAAGACGGGGAGATGTGGGTGCCATGTGGTCCCCGACAACCTGGGGCTGTGCAAACCACTATGCAGGAACTTGCAGTTAAGGGTCTGGCTTCAAAGATTCTGCCCCCGCCGATTTCAAAGGCAGATTTTGACAAAGTCCTTGCAAGGCAGAGACCAACTGTTAGCAAGCACGACCTAGAAGTCCACGAGCGATTCACAAAGGAATTTGGTGAAGAGGGCTGA___CAAATTTTCTTTGTCAAGGTCTTCCAATTGTATTATTTCCATTATTCTCCGACCAGATTAGTGGCTTGTAACATCTGTCGGTTGTTCTGGATTCTTATAAAATTAATGGGCTTTCGTTGACCACGGGATACATCATTTATATGATCTGGTGGTATGTTTATCTTTCGTGGAGGCTATCTTCTGATTTTAATGATCCCCTTTTCGCGGTTTGCTCTTATTCAAATCTCAAAATTGTTACGAGGTATTTGTATATGAGAATTTGGGCTGGAACTAATCAAGTTACATAGCTCTTAAGTTATCCATCTCATGGGTATAAAAATATGGATCCTGTATTAGTAGCACGCAAATTAATTAAAACGGTGCTGTGGCTCCTTTAGG

Fln Alignment:

Contig368___FTGRRKPWKAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARDCAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPNNLTEGDFEDLARRTDGFSGSDISVCVKDVLFEPVRKTQDAMFFSKVSTEDGEMWVPCGPRQPGAVQTTMQELAVKGLASKILPPPISKADFDKVLARQRPTVSKHDLEVHERFTKEFGEEG
A9P2N1________________FTGKRKPWRAFLLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSKWMGESEKLVSNLFQMARDCAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPNNLTEGDFEDLARRTDGFSGSDISVCVKDVLFEPVRKTQDAMFFSKVSTKDGEMWMPCGPRQPGAVQTTMQELAVKGLASQILPPPISKADFDKVLARQRPTVSKHDLEVQERFTKEFGEEG

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
283	14		85		0.993533
285		85		14	0.993533
287	85			14	0.993533
341	87			12	0.992554
402	10			90	0.90298
403	10			90	0.90298
540			87	12	0.992554
898	20			80	0.995493
960	20			80	0.995493
961	80	20			0.995493
964			80	20	0.995493
1022	25	75			0.996473
1023	25		75		0.996473
1026			75	25	0.996473
1139		33	66		0.997452
1140	33	66			0.997452
1142	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain