SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene365

Length: 526 nt

UniGene Fasta

>biog3_v1.0_unigene365
AATGTCAGGATTCAATCAGGTGCTTCCCCTCTCATCCTTGCAAATATTTACTGAAAATGAGCTTGATTATCTTTTCTGTGGTGTGCGTAACTTGTGGGTGGCTGAAACACTTACTGATTACGTCAAATTTGATCATGGATATACGGCTCAAAGCCCTCCAATTTTAAATCTTCTTGAAATCATGGCAGAGTTCACCCCTTCACAGCAGCAAGCATTTTTGCAGTTTATTACTGGTTGCCCAAGGCTTCCTCCTGGAGGGTTGGGTGCTCTGAACCCAAAGTTGACTGTTGTTCGGAAGAATTTTTCAGGAGCAATCGGAGATCCGAATTCACAAAGAACAATGGATGCAGAATTGCCGAGTGTTATGACTTGTGCAAATTACCTCAAACTTCCTCCATACTCATCCAAGGAGGTAATGCGTGATAGGCTGTTATATGCCATCACTGAAGGGCAAGGTTCTTTTGACCTCTCGTGAGTTTCGTATGTAGAAGAAAAGTCCAGTATCCTTTCGTTCAAAAGCAACATT

Ace file of the UniGene biog3_v1.0_unigene365

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6658	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to KAK (KAKTUS) isoform 1 n=2 Tax=Vitis vinifera RepID=UPI0001982DD6	-	-	64%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	69%
Blast2go	e3 ubiquitin-protein ligase upl3-like	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	ligase activity	GO:0016874	Molecular Function	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	HECT	IPR000569	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9HR64

Fln msg: atg_distance in limit (1-15): atg_distance = 5,

Fln protein: MSGFNQVLPLSSLQIFTENELDYLFCGVRNLWVAETLTDYVKFDHGYTAQSPPILNLLEIMAEFTPSQQQAFLQFITGCPRLPPGGLGALNPKLTVVRKNFSGAIGDPNSQRTMDAELPSVMTCANYLKLPPYSSKEVMRDRLLYAITEGQGSFDLS*

Protein Length: 159

Fln nts: A_-_ATGTCAGGATTCAATCAGGTGCTTCCCCTCTCATCCTTGCAAATATTTACTGAAAATGAGCTTGATTATCTTTTCTGTGGTGTGCGTAACTTGTGGGTGGCTGAAACACTTACTGATTACGTCAAATTTGATCATGGATATACGGCTCAAAGCCCTCCAATTTTAAATCTTCTTGAAATCATGGCAGAGTTCACCCCTTCACAGCAGCAAGCATTTTTGCAGTTTATTACTGGTTGCCCAAGGCTTCCTCCTGGAGGGTTGGGTGCTCTGAACCCAAAGTTGACTGTTGTTCGGAAGAATTTTTCAGGAGCAATCGGAGATCCGAATTCACAAAGAACAATGGATGCAGAATTGCCGAGTGTTATGACTTGTGCAAATTACCTCAAACTTCCTCCATACTCATCCAAGGAGGTAATGCGTGATAGGCTGTTATATGCCATCACTGAAGGGCAAGGTTCTTTTGACCTCTCGTGA___GTTTCGTATGTAGAAGAAAAGTCCAGTATCCTTTCGTTCAAAAGCAACATT

Fln Alignment:

Contig365___GFNQVLPLSSLQIFTENELDYLFCGVRNLWVAETLTDYVKFDHGYTAQSPPILNLLEIMAEFTPSQQQAFLQFITGCPRLPPGGLGALNPKLTVVRKNFSGA-IGDPNS---QRTMDAELPSVMTCANYLKLPPYSSKEVMRDRLLYAITEGQGSFDLS
B9HR64________________GFNQVFDISSLQIFTPQELDYLLCGRRELWEPDTLVDHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSSAGNAMPNGTGPSESADDDLPSVMTCANYLKLPPYSTKEVMYKKLLYAISEGQGSFDLS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
427	33		66		0.997452
430	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain