SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene363

Length: 923 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene363

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4176	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Intron maturase, type II family protein [Arabidopsis thaliana] dbj\|BAB10231.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED95448.1\| Intron maturase, type II family protein [Arabidopsis thaliana]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	uncharacterized mitochondrial protein ymf11-like	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	RNA-directed DNA polymerase.	EC:2.7.7.49	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	RNA splicing	GO:0008380	Biological Process	81%
Blast2go	RNA-dependent DNA replication	GO:0006278	Biological Process	81%
Blast2go	mRNA processing	GO:0006397	Biological Process	81%
Blast2go	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	81%
Blast2go	RNA binding	GO:0003723	Molecular Function	81%
Blast2go	chloroplast	GO:0009507	Cellular Component	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3		IPR000442	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Tensin phosphatase, C2 domain	IPR014020	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQE1

Fln msg: Warning!, your query overlaps and the subject is separated, STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 307 - 696

Fln protein: YASMNLDHWMEEMITEIYCPSSTDVIWNDPVNSGSYNPSWPEFVPTSGREKTRKMDYIRYGGHILVGVRGPRGGAVYIRRKLMEYCEEKYGLKLDKDGFPIExxxFATQAHSNLQMNKFLETMAEWFRYADNRKKVTRFCSYIIRGSLAKLYAAKYKLHSRAKVYKAASRNLSRPLKEREGELPEYSELLRMGLIDAIHGINFTLSSLVPTTDYTPFPTNWMPEHERVLQEYIKVLTPKLLRNSGPY*SNKG*LRHRITCQCWCGTSKCMEYLRIARQLLKHSPNSKNT*FSLERMTEMMKMVVYLI

Protein Length: 308

Fln nts: CATATGCCTCAATGAATTTGGATCACTGGATGGAAGAAATGATTACTGAGATTTATTGCCCTTCAAGTACTGACGTTATATGGAACGATCCAGTCAATTCAGGGAGCTACAACCCTTCCTGGCCAGAATTCGTTCCAACCAGTGGTCGAGAGAAAACCAGGAAAATGGACTATATACGTTATGGTGGGCACATCTTGGTTGGGGTGAGAGGTCCTCGGGGAGGTGCTGTTTACATTCGGAGAAAACTAATGGAATATTGTGAAGAGAAGTATGGGTTGAAGCTTGACAAAGATGGCTTCCCAATAGAGxxxxxxxxxTTTGCAACTCAAGCACACAGCAATTTACAAATGAACAAGTTTCTTGAAACCATGGCAGAATGGTTCAGATATGCAGACAACCGGAAGAAAGTAACTAGATTTTGCTCCTACATTATTCGTGGTTCTCTTGCAAAGCTCTATGCTGCAAAGTACAAGCTCCATTCTAGAGCCAAGGTTTACAAGGCCGCCTCACGCAATCTAAGTCGCCCATTAAAAGAGAGGGAGGGTGAGTTGCCAGAATACAGCGAGCTTTTAAGAATGGGACTAATTGATGCCATTCATGGCATTAATTTTACTCTCTCTTCTTTGGTGCCCACAACCGACTATACGCCCTTTCCAACTAACTGGATGCCAGAACACGAGAGAGTTTTACAGGAATATATAAAAGTGCTCACCCCGAAACTTTTAAGGAACAGCGGGCCTTACTGAAGCAACAAGGGCTAATTACGCCACAGGATTACATGTCAATGTTGGTGTGGAACTTCAAAATGCATGGAGTATTTACGGATTGCACGCCAACTCCTGAAACACAGTCCAAACAGCAAAAATACATAGTTCAGTCTGGAGAGAATGACCGAAATGATGAAGATGGTTGTATATCTAATAAA

Fln Alignment:

Contig363___LDHWMEEMITEIYCPSSTDVIWNDPVNSGSYNPSWPEFVPTSGREKTRKMDYIRYGGHILVGVRGPRGGAVYIRRKLMEYCEEKYGLKLDKDGFPIEHVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMYFATQAHSNLQMNKFLETMAEWFRYADNRKKVTRFCSYIIRGSLAKLYAAKYKLHSRAKVYKAASRNLSRPLKEREGELPEYSELLRMGLIDAIHGINFTLSSLVPTTDYTPFPTNWMPEHERVLQEYIKVLTPKLLRNSGPY*SNKG
B8LQE1________________LDHWMEERITEFYCPSSTDVIWNDPTNSGSYNPSWPEFVPTSGREKTRKMDYIRYGGHILVGVRGPRGGAVYIRKKLMEYCEEKYGLNLDKDGFPIEHIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMYFATQAHSNLQMNKFLETMAEWFRYADNRKKVIRFCSYIIRGSLAKLYAAKYKLRSRAKVYKAASRNLSRPLKEREGELPEYSELLRMGLIDAIHGINFTLSSLVPTTDYTPFPTNWMPEHERVLQEYIKVLTPKTFKEQRALLKQKG

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
613	25			75	0.996473
614	25	75			0.996473
616		75	25		0.996473
725	33			66	0.997452
726	66	33			0.997452
728			66	33	0.997452
729			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain