SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene355

Length: 420 nt

UniGene Fasta

>biog3_v1.0_unigene355
TTATGATATGCCTGAGTATCTGAAGCTGGAATTTATAAGGGAAACTGGTTTTGCACATATGAGGATATCAGATGGAGTCGGTTCACTTCTCCAATTATCTGGTCTTCTTGCCAAGTTATCCATTGTCCGGGATACATCCAAAGCTGCATAGTTATGTTTGGATTTGGTAATGTGTGTTTGTTTAGGAAATGCAAAGCTAGTCGTGAAAGGTTAGATTGTGTGAGAAACAGATTGTCTAAGAGCATGGGTACGATGAAATCGATGAGAAGCATGCCCTGCATATGCTATAATCCAAATTGTTTTCCAGCCTTAAAAAACCTTTCATTATTTTTGTGTTTAACAATGAGTTTGAGTTGTCTAATTTAGCTCAGCTAATCCTATTCTGGGGATAAAGATTTCTATGAAAGTTATTCTGTCAAT

Ace file of the UniGene biog3_v1.0_unigene355

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6794	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	replication factor C 40kDa subunit [Oryza sativa Japonica Group] emb\|CAH67033.1\| OSIGBa0139P06.6 [Oryza sativa Indica Group] gb\|EEC77820.1\| hypothetical protein OsI_17026 [Oryza sativa Indica Group]	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	replication factor c subunit 2-like	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed DNA polymerase.	EC:2.7.7.7	-	0.0	92%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	92%
Blast2go	Pyrimidine metabolism	00240	92%
Blast2go	Metabolic pathways	01100	92%

Source	GOs	Term	Type	Identity
Blast2go	DNA replication	GO:0006260	Biological Process	92%
Blast2go	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	92%
Blast2go	DNA clamp loader activity	GO:0003689	Molecular Function	92%
Blast2go	ATP binding	GO:0005524	Molecular Function	92%
Blast2go	DNA replication factor C complex	GO:0005663	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Replication factor C, C-terminal domain	IPR013748	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9V5

Fln msg: your sequence is shorter than subject: 50 - 335

Fln protein: YDMPEYLKLEFIRETGFAHMRISDGVGSLLQLSGLLAKLSIVRDTSKAA*

Protein Length: 51

Fln nts: TTATGATATGCCTGAGTATCTGAAGCTGGAATTTATAAGGGAAACTGGTTTTGCACATATGAGGATATCAGATGGAGTCGGTTCACTTCTCCAATTATCTGGTCTTCTTGCCAAGTTATCCATTGTCCGGGATACATCCAAAGCTGCATAG___TTATGTTTGGATTTGGTAATGTGTGTTTGTTTAGGAAATGCAAAGCTAGTCGTGAAAGGTTAGATTGTGTGAGAAACAGATTGTCTAAGAGCATGGGTACGATGAAATCGATGAGAAGCATGCCCTGCATATGCTATAATCCAAATTGTTTTCCAGCCTTAAAAAACCTTTCATTATTTTTGTGTTTAACAATGAGTTTGAGTTGTCTAATTTAGCTCAGCTAATCCTATTCTGGGGATAAAGATTTCTATGAAAGTTATTCTGTCAAT

Fln Alignment:

Contig355___YDMPEYLKLEFIRETGFAHMRIXXXXXXXXXXXXXXXXXXIVRDTSKAA
D5A9V5________________YDMPEYLKLEFIRETGFAHMRISDGVGSLLQLSGLLAKLSIVRDTSKAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain