SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene344

Length: 483 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene344
CCCGTATGTATACACTCAATGCCAGTCTATCCATGCTCGTTCTATATTCCCCTGTCAGGACACTCCCAGAGCGAGGATTCGGTACTCGGCTGTGCTAAACATTCCTGAACAGATGAGCTCTGTAATGTCTGCCGCCCATAAGGGCCGGATGGCTCCTTCCACAGGAGAAGGAAAGGGAGCATGCCCTGATGAGAAGTGGACGATGCATGGAAGAGTTGTTGAGAATTTTTCAATGCAGCAGCCAATACCTCCATATCTGTTTGCATTTGCTGTGGGAAATATCGTTTTTAAGGAGGTTGGTCCCAGGACTAGGATCTATTCTGAACCTTGTCCTGTTCTGGAAGCTGCAGAAAATGAGTTCAGAAACACAGAGGAGATGATAAAGCAGGGGGAAAAGCTCTTTGGTGAATATGAATGGGAGAGATTTGATCTCCTTGTATTGCCCCCGAGTTTCCCATATGGAGGAATGGAGAATCCCAGGTT

Ace file of the UniGene biog3_v1.0_unigene344 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene419	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	Leukotriene A-4 hydrolase, putative n=1 Tax=Ricinus communis RepID=B9SD61_RICCO	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	leukotriene-a4 hydrolase	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	leukotriene biosynthetic process	GO:0019370	Biological Process	75%
Blast2go	proteolysis	GO:0006508	Biological Process	75%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	75%
Blast2go	metallopeptidase activity	GO:0008237	Molecular Function	75%

Source	InterPros	Term	Type	Identity
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Phosphoinositide 3-kinase, accessory (PIK) domain	IPR001263	-	-
Sma3	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	IPR001930	-	-
Sma3	Peptidase M1, membrane alanine aminopeptidase, N-terminal	IPR014782	-	-
Sma3	Peptidase M1, leukotriene A4 hydrolase, aminopeptidase C-terminal	IPR015211	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A828

Fln msg: Distance to subject end: 327 aas, your sequence is shorter than subject: 160 - 614

Fln protein: PYVYTQCQSIHARSIFPCQDTPRARIRYSAVLNIPEQMSSVMSAAHKGRMAPSTGEGKGACPDEKWTMHGRVVENFSMQQPIPPYLFAFAVGNIVFKEVGPRTRIYSEPCPVLEAAENEFRNTEEMIKQGEKLFGEYEWERFDLLVLPPSFPYGGMENPR

Protein Length: 161

Fln nts: CCCGTATGTATACACTCAATGCCAGTCTATCCATGCTCGTTCTATATTCCCCTGTCAGGACACTCCCAGAGCGAGGATTCGGTACTCGGCTGTGCTAAACATTCCTGAACAGATGAGCTCTGTAATGTCTGCCGCCCATAAGGGCCGGATGGCTCCTTCCACAGGAGAAGGAAAGGGAGCATGCCCTGATGAGAAGTGGACGATGCATGGAAGAGTTGTTGAGAATTTTTCAATGCAGCAGCCAATACCTCCATATCTGTTTGCATTTGCTGTGGGAAATATCGTTTTTAAGGAGGTTGGTCCCAGGACTAGGATCTATTCTGAACCTTGTCCTGTTCTGGAAGCTGCAGAAAATGAGTTCAGAAACACAGAGGAGATGATAAAGCAGGGGGAAAAGCTCTTTGGTGAATATGAATGGGAGAGATTTGATCTCCTTGTATTGCCCCCGAGTTTCCCATATGGAGGAATGGAGAATCCCAGGTT

Fln Alignment:

Contig344___PYVYTQCQSIHARSIFPCQDTPRARIRYSAVLNIPEQMSSVMSAAHKGRMAPSTGEGKGACPDEKWTMHGRVVENFSMQQPIPPYLFAFAVGNIVFKEVGPRTRIYSEPCPVLEAAENEFRNTEEMIKQGEKLFGEYEWERFDLLVLPPSFPYGGMENPR
D5A828________________PYVYAQCQSIYARSIFPCQDTPRARIQYSALLNIPEQMSSVMSAAHKGRMAPLIGEANGACLDEKWAMHGRVVEHFSMHQPIPPYLFAFAVGNIVSKEVGPTTRIYSEPCPVLEAAELEFKNTEEMIKQGEKLFGDYEWERFDLLVLPPSFPYGGMENPR

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
102	25			75	0.996473
106		75		25	0.996473
356	25		75		0.996473
358		75		25	0.996473
359	75		25		0.996473
377	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain