SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene333

Length: 417 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene333
AATGTCAATAATCTGAATGCAACACATGGATGGAGTCTTCCCTCGGACCTTCAAGGGTCAGCTAACCTGAATAGTCTCACAGGACCCATTCCCTCGTCTTTCAATGGGTCTGGGCTGCAGACTTTTCAGCTCAATAACCAGGCTGCGCCTTCCCTGTCAGGTCCAATTGATGTGGTGGGCACAATGCAGTCTTTGAAACAGTTGTGGTTGCATGGAAACAACTTCAATGGAACAATTCCTCCTTCTCTCGGCGATTGTGTTTCTTTGACAGAAATCAAGCTCAATGGCAATGAACTAGTTGGGCCAATCCCATCCAACCTCACAAATTTGCAGCTCACAAATCTCACCCTGGATAGTAACAAGCTTTCTGGACCAATTCCCGACTTGAAGCTTCCTCCGGGTGGCTTCACCTACATT

Ace file of the UniGene biog3_v1.0_unigene333 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4830	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM17_MARPO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	35%
Blast2go	protein	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	0.0	80%
Blast2go	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	80%
Blast2go	receptor activity	GO:0004872	Molecular Function	80%
Blast2go	non-membrane spanning protein tyrosine kinase activity	GO:0004715	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	MAP kinase kinase kinase activity	GO:0004709	Molecular Function	80%
Blast2go	integral to membrane	GO:0016021	Cellular Component	80%
Blast2go	mitochondrion	GO:0005739	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRW5

Fln msg: Distance to subject end: 244 aas, your sequence is shorter than subject: 139 - 551

Fln protein: NVNNLNATHGWSLPSDLQGSANLNSLTGPIPSSFNGSGLQTFQLNNQAAPSLSGPIDVVGTMQSLKQLWLHGNNFNGTIPPSLGDCVSLTEIKLNGNELVGPIPSNLTNLQLTNLTLDSNKLSGPIPDLKLPPGGFTYI

Protein Length: 140

Fln nts: AATGTCAATAATCTGAATGCAACACATGGATGGAGTCTTCCCTCGGACCTTCAAGGGTCAGCTAACCTGAATAGTCTCACAGGACCCATTCCCTCGTCTTTCAATGGGTCTGGGCTGCAGACTTTTCAGCTCAATAACCAGGCTGCGCCTTCCCTGTCAGGTCCAATTGATGTGGTGGGCACAATGCAGTCTTTGAAACAGTTGTGGTTGCATGGAAACAACTTCAATGGAACAATTCCTCCTTCTCTCGGCGATTGTGTTTCTTTGACAGAAATCAAGCTCAATGGCAATGAACTAGTTGGGCCAATCCCATCCAACCTCACAAATTTGCAGCTCACAAATCTCACCCTGGATAGTAACAAGCTTTCTGGACCAATTCCCGACTTGAAGCTTCCTCCGGGTGGCTTCACCTACATT

Fln Alignment:

Contig333___NATHGWSLPSDLQGSANLNSL-------TGPIPSSF-NGSGLQTFQLNNQAAPSLSG--PIDVVGTMQSLKQLWLHGNNFNGTIPPSLGDCVSLTEIKLNGNELVGPIP
B8LRW5________________NQLHG-SIPSELGRLSQLNALYLHHNYFSGQIPPSLSNCTLLLDLQLH---ANQLTGHIPWEFGGRLSQLENLFLWGNKLRGEIPKTLANCSHLRVLDLTDNQLTGTVP

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
270	33		66		0.997452
273	33		66		0.997452
274		66		33	0.997452
275	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain