SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene322

Length: 577 nt

UniGene Fasta

>biog3_v1.0_unigene322
AATGTATTGACTTGAATTGGGAAAAATGGGAGAAGGAGCTTGATGAGTGGAAGCCCTGGGGAAATGATGGAGAGATTGACTTAGACGCACTTGTTCAAAATAAAGGTCCTGTGGATGTTAAGGAACCACCTCCAGAGTTATTAATGCCATTACTTCCTTTCCAAAAAGAGTGGTTGGCTTGGAGTTTAAAACAAGAAGAATCTGAATTCAATGGTGGTATTCTTGCAGATGAAATGGGGATGGGGAAGACAATACAAGCAATTTCCCTTGTTTTAGCTAGTCGTGCCCTTCGATTAGGTCAATCTCTTGCTGATAAGACATGTATTATGCAAGATACTTTGGGAGCATCTAGTAGTGATTGCAAGGTACTACCTCAGGTTAAAGGCACCCTTGTTGTTTGTCCCATGGTAGCTGTTATTCAATGGAGGAACGAGATTGCTCGGTTCACTGCTGAAGGAAGCACTAAAGTTTTGGTTTATCATGGCGCCAATAGATGTAAAGATGTGGCCGAGCTTTCTCAATACGATTTTGTTTTGACTACTTATTCCATTGTTGAGATAGAACATAGAAAGACATT

Ace file of the UniGene biog3_v1.0_unigene322

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene687	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein n=1 Tax=Vitis vinifera RepID=UPI00019843BD	-	-	57%
FL-Next	sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	34%
Blast2go	atp-dependent helicase rhp16-like	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	63%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	63%
Blast2go	catalytic activity	GO:0003824	Molecular Function	63%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FIY7

Fln msg: Distance to subject end: 471 aas, your sequence is shorter than subject: 191 - 1277

Fln protein: CIDLNWEKWEKELDEWKPWGNDGEIDLDALVQNKGPVDVKEPPPELLMPLLPFQKEWLAWSLKQEESEFNGGILADEMGMGKTIQAISLVLASRALRLGQSLADKTCIMQDTLGASSSDCKVLPQVKGTLVVCPMVAVIQWRNEIARFTAEGSTKVLVYHGANRCKDVAELSQYDFVLTTYSIVEIEHRKT

Protein Length: 192

Fln nts: AATGTATTGACTTGAATTGGGAAAAATGGGAGAAGGAGCTTGATGAGTGGAAGCCCTGGGGAAATGATGGAGAGATTGACTTAGACGCACTTGTTCAAAATAAAGGTCCTGTGGATGTTAAGGAACCACCTCCAGAGTTATTAATGCCATTACTTCCTTTCCAAAAAGAGTGGTTGGCTTGGAGTTTAAAACAAGAAGAATCTGAATTCAATGGTGGTATTCTTGCAGATGAAATGGGGATGGGGAAGACAATACAAGCAATTTCCCTTGTTTTAGCTAGTCGTGCCCTTCGATTAGGTCAATCTCTTGCTGATAAGACATGTATTATGCAAGATACTTTGGGAGCATCTAGTAGTGATTGCAAGGTACTACCTCAGGTTAAAGGCACCCTTGTTGTTTGTCCCATGGTAGCTGTTATTCAATGGAGGAACGAGATTGCTCGGTTCACTGCTGAAGGAAGCACTAAAGTTTTGGTTTATCATGGCGCCAATAGATGTAAAGATGTGGCCGAGCTTTCTCAATACGATTTTGTTTTGACTACTTATTCCATTGTTGAGATAGAACATAGAAAGACATT

Fln Alignment:

Contig322___GGILADEMGMGKTIQAISLVLASRALRLGQSLADKTCIMQDTLGASSSDCK----VLPQVK---GTLVVCPMVAVIQWRNEIARFTAEGSTKVLVYHGANRCKDVAELSQYDFVLTTYSIVEIEHRK
Q9FIY7________________GGILADAMGLGKTVMTIALILA----RPGRGNPENEDVLVADVNADKRNRKEIHMALTTVKAKGGTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTHDAKAIASHDVVLTTYGVLTSAYKQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain