SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene306

Length: 960 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene306

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10053	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	Golgi SNARE 12 protein n=4 Tax=Arabidopsis RepID=GOS12_ARATH	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	golgi snare 12 protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	cellular membrane fusion	GO:0006944	Biological Process	85%
Blast2go	intra-Golgi vesicle-mediated transport	GO:0006891	Biological Process	85%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	85%
Blast2go	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	85%
Blast2go	SNARE binding	GO:0000149	Molecular Function	85%
Blast2go	Golgi membrane	GO:0000139	Cellular Component	85%
Blast2go	vacuole	GO:0005773	Cellular Component	85%
Blast2go	integral to membrane	GO:0016021	Cellular Component	85%
Blast2go	cis-Golgi network	GO:0005801	Cellular Component	85%
Blast2go	cytosol	GO:0005829	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Vesicle transport v-SNARE, N-terminal	IPR007705	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYW3

Fln msg: atg_distance in limit (1-15): atg_distance = 4,

Fln protein: MDVGWEELRREARKLEGDLDVRLSSYAKLGGRLAHGGYADAGSSTDVIAGDRSWKSMEMEIQSLLEKLLDINDAMSRCAATATPTTSITQKLARHRDILHEFTQEFKRTKGNINAMREHAELLTSVRNDISEYKASGSMSPGPSLLRERAAIHGSISQIDDVIGQAQATRSVLSSQRTLFAEIQGKVKQLSDRFPVIRGLLGAIKRKRSKDTLILSAVIAGCTLFLILYWIAK*

Protein Length: 235

Fln nts: AAACATTGGATGCC_-_ATGGATGTGGGATGGGAAGAACTAAGAAGGGAAGCTCGTAAATTAGAAGGTGATTTGGACGTCAGACTCTCTTCTTATGCCAAGCTGGGAGGGAGGCTTGCTCACGGAGGGTATGCAGATGCTGGATCATCAACTGATGTTATTGCAGGGGATCGGTCATGGAAATCCATGGAAATGGAAATCCAGTCACTACTTGAGAAATTGTTGGATATAAATGATGCAATGAGTCGGTGTGCTGCCACTGCAACACCAACTACTTCTATTACACAAAAGCTTGCAAGGCATAGAGACATTCTTCATGAATTTACACAGGAATTTAAGCGCACGAAAGGAAACATTAATGCCATGAGGGAGCATGCTGAGCTCCTTACGTCTGTTCGTAATGACATCAGTGAGTACAAGGCTTCTGGAAGTATGTCACCTGGACCAAGTTTGCTACGAGAGAGGGCAGCCATACATGGAAGCATTTCCCAGATTGATGATGTGATTGGTCAAGCGCAAGCAACCAGAAGTGTACTAAGCTCCCAAAGAACCTTGTTCGCTGAAATTCAGGGGAAAGTCAAGCAATTAAGTGACAGATTTCCAGTTATTCGTGGCTTGTTAGGAGCCATCAAAAGGAAACGTTCCAAAGATACACTCATTCTCTCAGCTGTGATTGCTGGTTGCACGTTGTTCCTCATTCTTTACTGGATTGCTAAATGA___AATCATTGATTGACCATATAAAAATATGGGTATCATGTTTGTCGAGATATGGTTTTGACATCTTGAATTTAAGTGTCATGAAAATGATATTTGGAAGCCAAGATTTGTCCATGTATTTTGTTAGGCTTTTATTCATTTATTAGTTTATGCTCCGAGTAACTGGACGAATATGCTGCCCAATACAGTAATCATCATTATATAGTTATTACAATTGGCAGTATATCGGCTCTGCCTACTATACATT

Fln Alignment:

Contig306___TLDAMDVGWEELRREARKLEGDLDVRLSSYAKLGGRLAHGGYADAGSSTDVIAGDRSWKSMEMEIQSLLEKLLDINDAMSRCAATATPTTSITQKLARHRDILHEFTQEFKRTKGNINAMREHAELLTSVRNDISEYKASGSMSPGPSLLRERAAIHGSISQIDDVIGQAQATRSVLSSQRTLFAEIQGKVKQLSDRFPVIRGLLGAIKRKRSKDTLILSAVIAGCTLFLILYWIAK
A9NYW3________________TMDAMDAGWEELRREARKLEGDLDVRLSSYAKLGGRLAHGG-------------DRSWKSMEMEIQSLLEKLLDINDAMSRCAATATPTTSITQKLARHRDILHEFTQEFKRTKGNINAMREHAELLTSVRNDISEYKASGSMSPGPSLLRERAAIHGNISQIDDVIGQAQATRSVLSSQRTLVAEIQGKVKQLSDRFPVIRGLLGAIKRKRSKDTLILSAVIAGCTLFLILYWIAK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
313	33	66			0.997452
317	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain