SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene267

Length: 278 nt

UniGene Fasta

>biog3_v1.0_unigene267
AATGTGTTAGTATAGGACTTTCAGGTCGGAAAGATGAAGTGGTGTTCGAAGCTATTGTCAGAAATTCTGAGAGCCCTCTGAAAAATTCTAGAGTGGTATTACGGCAACTTACAGGGTTTCATGCGCAGCGCAGGGGCAGACGTGCTTTAGAGGTTCTGAGAAAACTTGCTCGTCGCCAGTTTATGTATCGTTCATATGCAACAAGAGTCCACGGATATATACTTCCATCTGGTGCTATGGATCAGTGCTCATTCACCTTAGTGCATGGATAGTATGGG

Ace file of the UniGene biog3_v1.0_unigene267

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6044	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pkinase domain containing protein	-	-	5.0e-07	28%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice).	-	-	0.0	62%
Blast2go	obp3-responsive protein 1	-	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	80%
Blast2go	protein binding	GO:0005515	Molecular Function	80%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	structural molecule activity	GO:0005198	Molecular Function	80%
Blast2go	chloroplast	GO:0009507	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: B8A6V2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 479 aas, atg_distance in limit (1-15): atg_distance = 9, W2: There is no M at the beginning, your sequence is shorter than subject: 90 - 581

Fln protein: CVSIGLSGRKDEVVFEAIVRNSESPLKNSRVVLRQLTGFHAQRRGRRALEVLRKLARRQFMYRSYATRVHGYILPSGAMDQCSFTLVHG*

Protein Length: 91

Fln nts: A_-_ATGTGTTAGTATAGGACTTTCAGGTCGGAAAGATGAAGTGGTGTTCGAAGCTATTGTCAGAAATTCTGAGAGCCCTCTGAAAAATTCTAGAGTGGTATTACGGCAACTTACAGGGTTTCATGCGCAGCGCAGGGGCAGACGTGCTTTAGAGGTTCTGAGAAAACTTGCTCGTCGCCAGTTTATGTATCGTTCATATGCAACAAGAGTCCACGGATATATACTTCCATCTGGTGCTATGGATCAGTGCTCATTCACCTTAGTGCATGGATAGTATGGG

Fln Alignment:

Contig267___VSIGLSGRKDEVVFEAIVRNSESPLKNSRVVLRQLTGFHAQRRGRRALEVLRKLARRQFMYRSYATRVHGYILPSGAMDQ--CSFTLVHG*YG
B8A6V2________________VSVGLHGRSDEMIFEATVRDPSSELYGSTVVLRQLMSFQAKRRGRRALEVLKKLARRQMMYHSYAMQVHGYVTPGNDVEQDDGSFILVHGYHG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain