SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene262

Length: 690 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene262 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8104	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	phosphoadenosine phosphosulfate (PAPS) reductase family protein [Arabidopsis thaliana] emb\|CAB83302.1\| putative protein [Arabidopsis thaliana] gb\|AED90602.1\| phosphoadenosine phosphosulfate (PAPS) reductase family protein [Arabidopsis thaliana]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	phosphoadenosine phosphosulfate reductase family protein	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	Mo-molybdopterin cofactor biosynthetic process	GO:0006777	Biological Process	75%
Blast2go	transferase activity	GO:0016740	Molecular Function	75%
Blast2go	mitochondrion	GO:0005739	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Molybdopterin binding	IPR001453	-	-
Sma3	Phosphoadenosine phosphosulphate reductase	IPR002500	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
251	16		83		0.994512
252	16			83	0.994512
405	20	80			0.995493
408		80		20	0.995493
518	20			80	0.995493
519	20	80			0.995493
520			80	20	0.995493
601	25			75	0.996473
604			75	25	0.996473
605	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain