SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene260

Length: 402 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene260
ACAGTGATCAAGCCCAGTTTCCCAGAGGAGATCCTGATCATGGCGCCCTCACGCGCCACTCTGCTCTGCGGAAGTTCAAGGAGTTCATTCGCAGCTTCAATGGCGTAAAAGGGGACTTCCCTTACAGAGAGGGCCTTGTACACAACCCGAAGTTTCTGCTAGTCGCCATAGAAGACATCGATTCATTTGATGCGGAATTATCAGAGAAAATCCGCAAAGCTCCCGCCGATTTCTTACCTCTGTTTGAGTCGGCAGCTGCAGAGGTTTTAGCTGGACTAAAGTCGAAGATCGCCGGGGAAACAGGTGAAATGGAGGAGCCAAGCACTGGTGAAGTGCAGGTTTTGCTGTCCTCCAAGGAGAACTCCATATCTATCCGGTCCCTTGGTGCGGATTTTATCTCAA

Ace file of the UniGene biog3_v1.0_unigene260 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10081	1/3
SustainPine v2.0	sp_v2.0_unigene27318	2/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[L] COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family	-	-	1.0e-37	32%
FL-Next	tr=Os02g0797400 protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	72%
Blast2go	at2g07360-like protein	-	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	85%
Blast2go	cytoplasm	GO:0005737	Cellular Component	85%
Blast2go	nucleus	GO:0005634	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Mini-chromosome maintenance, DNA-dependent ATPase	IPR001208	-	-
Sma3	FAD dependent oxidoreductase	IPR006076	-	-
Sma3	Mini-chromosome maintenance complex protein 5	IPR008048	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Mini-chromosome maintenance, conserved site	IPR018525	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: Q6KAJ4

Fln msg: Distance to subject end: 582 aas, atg_distance in limit (1-15): atg_distance = 12, W2: There is no M at the beginning, your sequence is shorter than subject: 133 - 729

Fln protein: SDQAQFPRGDPDHGALTRHSALRKFKEFIRSFNGVKGDFPYREGLVHNPKFLLVAIEDIDSFDAELSEKIRKAPADFLPLFESAAAEVLAGLKSKIAGETGEMEEPSTGEVQVLLSSKENSISIRSLGADFIS

Protein Length: 134

Fln nts: ACAGTGATCAAGCCCAGTTTCCCAGAGGAGATCCTGATCATGGCGCCCTCACGCGCCACTCTGCTCTGCGGAAGTTCAAGGAGTTCATTCGCAGCTTCAATGGCGTAAAAGGGGACTTCCCTTACAGAGAGGGCCTTGTACACAACCCGAAGTTTCTGCTAGTCGCCATAGAAGACATCGATTCATTTGATGCGGAATTATCAGAGAAAATCCGCAAAGCTCCCGCCGATTTCTTACCTCTGTTTGAGTCGGCAGCTGCAGAGGTTTTAGCTGGACTAAAGTCGAAGATCGCCGGGGAAACAGGTGAAATGGAGGAGCCAAGCACTGGTGAAGTGCAGGTTTTGCTGTCCTCCAAGGAGAACTCCATATCTATCCGGTCCCTTGGTGCGGATTTTATCTCAA

Fln Alignment:

Contig260___SDQAQFPRGDP--DHGA-LTRHSALRKFKEFIRSFNGVKGDFPYREGLVHNPKFLLVAIEDIDSFDAELSEKIRKAPADFLPLFESAAAEVLAGLKSKIAGETGEMEEPSTGEVQVLLSSKENSISIRSLGADFIS
Q6KAJ4________________SDQAQFPRGGPGGDPSADLTRHSALRKFKEFLRGFTGPTGDFPYRESLVHNRDHVTVAIEDLDAFDAELSDKIRKSPADYLPLFETAASEVLASLRSKVAGETGEMEEPATGDVQIFLSSKENCLSMRSIGADYMS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
179			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain