SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene254

Length: 1136 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene254

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene800	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to splicing factor, putative n=1 Tax=Vitis vinifera RepID=UPI0001983CB2	-	-	94%
FL-Next	tr=Splicing factor 3B subunit, putative; Ricinus communis (Castor bean).	-	-	97%
Blast2go	splicing factor 3b subunit 1-like	-	-	97%

Source	GOs	Term	Type	Identity
Blast2go	mRNA processing	GO:0006397	Biological Process	97%
Blast2go	binding	GO:0005488	Molecular Function	97%
Blast2go	chloroplast	GO:0009507	Cellular Component	97%

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3		IPR001449	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Splicing factor 3B subunit 1	IPR015016	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SIK7

Fln msg: Distance to subject end: 383 aas, your sequence is shorter than subject: 378 - 1233

Fln protein: CHLLVKVIDRVLYKLDELVRPFVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILMGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDAMYASYYTKEVMVILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRAEILPEFFRNFWVRRMALDRRNYRQLVDTTVEIANKVGVADIVGRTVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALSQRV

Protein Length: 379

Fln nts: AATGTCATCTTTTGGTCAAGGTAATTGATAGAGTTCTTTATAAACTGGATGAACTTGTCAGGCCATTCGTGCATAAGATTCTTGTGGTCATTGAACCACTTCTTATAGATGAAGATTACTATGCCCGTGTCGAGGGAAGAGAGATTATTTCCAACTTGAGCAAGGCTGCAGGACTTGCAACTATGATTGCCGCCATGAGACCTGATATTGATAACATTGATGAATATGTGCGAAACACAACTGCAAGGGCTTTTAGTGTAGTTGCTTCTGCTCTGGGAATTCCAGCCCTCTTGCCATTTTTGAAAGCAGTGTGTCAGAGTAAGAAATCATGGCAAGCACGACATACTGGTATCAAGATTGTCCAACAGATAGCTATTCTCATGGGTTGTGCTGTTCTACCGCATCTACGGTCCCTTGTTGAAATTATAGAACACGGTCTGAATGATGAAAATCAAAAGGTGAGAACTATTACTGCATTATCACTTGCTGCACTTGCAGAGGCTGCAGCACCTTATGGAATAGAAAGCTTTGATTCTGTTCTTAAACCTTTATGGAAGGGTATCCGTTCACATCGTGGTAAAGTCCTTGCCGCCTTTTTGAAGGCTATTGGTTTTATTATACCTCTCATGGATGCCATGTATGCTAGTTATTATACAAAGGAAGTGATGGTTATCTTGATACGCGAGTTCCAATCTCCTGATGAAGAAATGAAAAAGATTGTTTTGAAAGTGGTTAAGCAGTGTGTCAGTACAGAGGGCGTGGAAGCAGATTACATTCGAGCAGAAATACTTCCTGAATTCTTTCGTAATTTCTGGGTTAGAAGGATGGCTCTGGATCGTAGGAACTACAGGCAGTTGGTAGATACAACTGTTGAGATAGCTAACAAAGTGGGAGTTGCTGATATTGTGGGAAGGACTGTCGAAGATCTTAAAGATGAAAGTGAACCATATCGCCGAATGGTAATGGAGACAATTGAAAAGGTAGTTGCCAACCTGGGAGCTTCAGATATTGATGCTCGTCTGGAGGAGTTACTCATTGATGGAATACTTTATGCTTTCCAAGAGCAGACCAGTGATGATGCCAATGTGATGTTGAATGGATTTGGTGCCGTGGTGAATGCTTTAAGCCAGAGAGTC

Fln Alignment:

Contig254___HLLVKVIDRVLYKLDELVRPFVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILMGCAVLPHLRSLVEIIEHGLNDENQKVRTITXXXXXXXXXXXXPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDAMYASYYTKEVMVILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRAEILPEFFRNFWVRRMALDRRNYRQLVDTTVEIANKVGVADIVGRTVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALSQRV
B9SIK7________________HLLVKVIDRVLYKLDELVRPFVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDAIYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFWVRRMALDRRNYRQLVDTTVEIANKVGVKDIVGRIVEDLKDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALGQRV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
784			83	16	0.994512
785	83			16	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain