SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene237

Length: 777 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene237 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3628	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Inducer of CBF expression 1 (Fragment) n=1 Tax=Picea abies RepID=B2KZF3_PICAB	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	37%
Blast2go	transcription factor ice1	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	stomatal lineage progression	GO:0010440	Biological Process	80%
Blast2go	response to freezing	GO:0050826	Biological Process	80%
Blast2go	positive regulation of transcription, DNA-dependent	GO:0045893	Biological Process	80%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	80%
Blast2go	DNA binding	GO:0003677	Molecular Function	80%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	80%
Blast2go	nucleus	GO:0005634	Cellular Component	80%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	G %	T %	Probability
94		33	66	0.997452
99	33	33	33	0.997753
507	33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain