SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene229

Length: 612 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene229 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1445	10/10

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative transcription factor X1 [Triticum monococcum]	-	-	9.80909e-45	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	27%
Blast2go	xh xs domain-containing protein	-	-	0.0	61%

Source	GOs	Term	Type	Identity
Blast2go	DNA methylation	GO:0006306	Biological Process	61%
Blast2go	chromatin silencing	GO:0006342	Biological Process	61%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	61%

Source	InterPros	Term	Type	Identity
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Uncharacterised domain XH	IPR005379	-	-
Sma3	XS domain	IPR005380	-	-
Sma3	Zinc finger-XS domain	IPR005381	-	-
Sma3	Domain of unknown function DUF1263	IPR010685	-	-

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	T %	Probability
251	33	66		0.997452
252	33	66		0.997452
256	66		33	0.997452
387	40	60		1.0
388	40		60	1.0
545		25	75	0.996473
547	75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain