SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene224

Length: 392 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene224
AATGTCATTTGTTTCTGATTCAAATGACAGCAATCAACGTTCTTGTATTAATGACACTTCTGCACATAGTTTAGAAGGACAAACTAAACAAAGAACTAAAAATCCATAAATGACACTCTGGCTCAAGACAGTAGTTCCAATTTGAAGTCTGAAACTACTAGTTCTCAGTTAACAGGAGACAATGCTTCATTACCGACTTGGCATTGGGTTACAACCACGGGAGTGGGTCCAAATGGGATAACAATAAGTGGGATCTTATCCAGTTACAGTAGCAGTCACGTTAGAATAGTTTGCATCTGTCATGGCACCCAAATGTCACCTGCAGAATTTGTGCAACATGCAGGCAGCATAGATGTTTCAAATCCTGAAAGAAGCATCGTGGTTAATACATT

Ace file of the UniGene biog3_v1.0_unigene224 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21187	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ninja-family protein AFP3 n=1 Tax=Arabidopsis thaliana RepID=AFP3_ARATH	-	-	3.0e-09	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	ninja-family protein afp3	-	-	3.08565e-15	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	3.08565e-15	68%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Nuclear transport factor 2	IPR002075	-	-
Sma3	Protein of unknown function DUF1675	IPR012463	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Nuclear transport factor 2, Eukaryote	IPR018222	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZJ6

Fln msg: STOP codon was not found. Distance to subject end: 10 aas, atg_distance in limit (1-15): atg_distance = 6, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 97 - 143

Fln protein: KSINDTLAQDSSSNLKSETTSSQLTGDNASLPTWHWVTTTGVGPNGITISGILSSYSSSHVRIVCICHGTQMSPAEFVQHAGSIDVSNPERSIVVNT

Protein Length: 98

Fln nts: AATGTCATTTGTTTCTGATTCAAATGACAGCAATCAACGTTCTTGTATTAATGACACTTCTGCACATAGTTTAGAAGGACAAACTAAACAAAGAACTAAAAATCCATAAATGACACTCTGGCTCAAGACAGTAGTTCCAATTTGAAGTCTGAAACTACTAGTTCTCAGTTAACAGGAGACAATGCTTCATTACCGACTTGGCATTGGGTTACAACCACGGGAGTGGGTCCAAATGGGATAACAATAAGTGGGATCTTATCCAGTTACAGTAGCAGTCACGTTAGAATAGTTTGCATCTGTCATGGCACCCAAATGTCACCTGCAGAATTTGTGCAACATGCAGGCAGCATAGATGTTTCAAATCCTGAAAGAAGCATCGTGGTTAATACATT

Fln Alignment:

Contig224___TGDNASLPTWHWVTTTGVGPNGXXXXXXXXXXXXSHVRIVCICHGTQMSPAEFVQHAGSIDVSNPERSIVVNT
A9NZJ6________________TGNSPDLP---WVTTSGIGPNGKTISGVMYRYNRNQVKIVCACHGRHMSPSEFVQHAGGADTSNPDNNLVVNS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
123	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain