SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene220

Length: 564 nt

UniGene Fasta

>biog3_v1.0_unigene220
CCGAGAGAGAGTCAGCACAGTAGCAGCTGAACTCTTGGCACAGTTGCAGGATTGGAATTGTAGGAGAGAATTTACATCACCAAATGATTTTCATGCTCGTGATGCAGTTGATGGAATGTTCTATGCTCAGGCTGGAAGTGAAAATTCAAGAGCCCATGAGCTACTGAAACGAGCACCATTCTTAGTGCCATTTACAAACAGGGTTCAAATTTATACTTCTCAGTTAGCTGCAGCCAGACAACAAAACAGTTTTCACACACCCTTTGTACGGCACCGAATCAGGATAAGGCGGAATCGGGCTGTTGAGGATGCCTTCACTGAACTAAATGGATTGACAGGAGAAGAACTTAGGGGAATGATTCGTGTAATATTTGTGAATGAATTTGGAGTTGAAGAGCCTGGTGTTGATGGCGGTGGTATTTTCAAAGATTTTATGGAGAACATAACAAAAACAGCCTTTGATATACAGTATGGACTTTTCAAGGAAACTGCTGATCATCTTCTCTATCCAAATCCTGCATCAGGCACAATACATCCTGAACATCTCCAATATTTTGAGACATT

Ace file of the UniGene biog3_v1.0_unigene220

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1693	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] ref\|NP_001189915.1\| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] sp\|Q8RWB8.1\|UPL6_ARATH RecName: Full=E3 ubiquitin-protein ligase UPL6; Short=Ubiquitin-protein ligase 6 gb\|AAM13201.1\| unkn	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	e3 ubiquitin-protein ligase upl6	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	81%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	81%
Blast2go	ubiquitin ligase complex	GO:0000151	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	HECT	IPR000569	-	-
Sma3	TonB box, conserved site	IPR010916	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKQ9

Fln msg: Distance to subject end: 266 aas, your sequence is shorter than subject: 187 - 1032

Fln protein: RERVSTVAAELLAQLQDWNCRREFTSPNDFHARDAVDGMFYAQAGSENSRAHELLKRAPFLVPFTNRVQIYTSQLAAARQQNSFHTPFVRHRIRIRRNRAVEDAFTELNGLTGEELRGMIRVIFVNEFGVEEPGVDGGGIFKDFMENITKTAFDIQYGLFKETADHLLYPNPASGTIHPEHLQYFET

Protein Length: 188

Fln nts: CCGAGAGAGAGTCAGCACAGTAGCAGCTGAACTCTTGGCACAGTTGCAGGATTGGAATTGTAGGAGAGAATTTACATCACCAAATGATTTTCATGCTCGTGATGCAGTTGATGGAATGTTCTATGCTCAGGCTGGAAGTGAAAATTCAAGAGCCCATGAGCTACTGAAACGAGCACCATTCTTAGTGCCATTTACAAACAGGGTTCAAATTTATACTTCTCAGTTAGCTGCAGCCAGACAACAAAACAGTTTTCACACACCCTTTGTACGGCACCGAATCAGGATAAGGCGGAATCGGGCTGTTGAGGATGCCTTCACTGAACTAAATGGATTGACAGGAGAAGAACTTAGGGGAATGATTCGTGTAATATTTGTGAATGAATTTGGAGTTGAAGAGCCTGGTGTTGATGGCGGTGGTATTTTCAAAGATTTTATGGAGAACATAACAAAAACAGCCTTTGATATACAGTATGGACTTTTCAAGGAAACTGCTGATCATCTTCTCTATCCAAATCCTGCATCAGGCACAATACATCCTGAACATCTCCAATATTTTGAGACATT

Fln Alignment:

Contig220___RERVSTVAAELLAQLQDWNCRREFTSPNDFHARDAVDGMFYAQAGSENSRAHELLKRAPFLVPFTNRVQIYTSQLAAARQQNSFHTPFVXXXXXXXXXXAVEDAFTELNGLTGEELRGMIRVIFVNEFGVEEPGVDGGGIFKDFMENITKTAFDIQYGLFKETADHLLYPNPASGTIHPEHLQYFE
B8LKQ9________________RERVSTLAAELLAQLQDWNCRREFTSPNDFHARDAVDGMFYAQAGSENSRAHELLKRAPFLVPFTNRVQIYTSQLAAARQQNSFHTPFVRHRIRIRRNRAVEDAFSELNGLTGEELRGMIRVIFVNEFGVEEPGVDGGGIFKDFMENITKTAFDIQYGLFKETADHLLYPNPASGTIHPEHLQYFE

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
356	75			25	0.996473
357	25			75	0.996473
358		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain