SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene219

Length: 1744 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene219 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15698	31/32

Source	Descriptions	Term	Type	e value	Identity
AutoFact	acidic leucine-rich nuclear phosphoprotein 32-related protein [Arabidopsis thaliana] sp\|Q9SCQ7.1\|AN32_ARATH RecName: Full=Acidic leucine-rich nuclear phosphoprotein 32-related protein; AltName: Full=ANP32/acidic nuclear phosphoprotein-like protein emb\|CAB	-	-	5.60519e-45	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	protein	-	-	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVZ4

Fln msg: W1: There is no M at the beginning,

Fln protein: TSCGSLNCKKDGKSGQNPSEIVSLTLDGALKGTPCRLPPAALFEQFPRLQQLSLASAGLTSLEGFPSLPHLKRLVLSDNKISGGLEHLVQAGLKSLEDLDLSNNRIHVLEDLVPLSQFNLVSLDLYECPVTRLPEYRARVFDIIKSLEFLDKTDVEGGERLESDDEGEEVDSEDEDAEDVDNYTSEDKSNGVRSLNPSGDQDEDEFEQEDEEDELDVDEDDEYQDGVTINGHGVAPGHMAANAAGNSSDDDEVDDEDECENAEVQDLDDDGDEDSDEVVAEADDDDAGAAEDDEDDGATEHASSAPGELDVQDDDDNADDEDGELGDEEEDDEGVENDAEDDGEDEEEDYGTEYLVQPIGKPEDEDGGSDFEPVEDGAEDEDIDEDEDDDNYVAGNPAGNQKRSRDEIDSDSEDEERNPKRR*

Protein Length: 424

Fln nts: AAGTTTGCTGTCAATCTCCGTCGTTCAGGCCCCTGGTTTGAGTAATGGCGGCGAGCTAGCCAAGAAGAAGTGGCAGGGCAAGGATAGGAGCGTTTCAGAGCGGAGTGAGCGAGCCTATTTTCAAAAGCGTTTCGTGCAGTTAAGGCTGAAATTTGGTGCGTATCCATATTCATGCAAGAGACGATTGTGGCGGTTTCTTCATCGAACTTTTGAAGCTTCTGCCCTCCGAGGCTGGAATCTGCAGTTTTAATGAACTCGAACTGTGGGAAAGCTTGTGCTTGCTTAGTATGGCTTCAGGATAAAGTGATTTAGTTGGGAAAAGCAGTTTATTCTTGTGTTTTGAGTGGGTGGGTTTTGAACTTCTTGTGGAAGCTTGAATTGCAAGAAAGATGGAAAAAGCGGACAGAACCCTTCAGAAATCGTTTCTTTAACCCTAGACGGTGCCCTTAAAGGTACGCCGTGCAGGTTGCCTCCTGCGGCTTTGTTTGAGCAGTTTCCACGGCTCCAGCAGCTGTCATTAGCCAGCGCTGGCCTGACTTCTCTGGAAGGGTTTCCATCCTTGCCTCATTTAAAACGTCTTGTTCTTAGCGACAACAAGATCTCCGGCGGCCTCGAACATCTGGTGCAAGCGGGGCTTAAATCTCTGGAGGATCTCGATCTGTCGAATAATAGAATACATGTATTGGAGGATCTTGTTCCGTTGTCACAGTTTAACCTTGTGTCTTTGGACCTGTACGAGTGCCCCGTGACGCGGCTGCCAGAGTACAGAGCTAGGGTTTTCGACATCATCAAATCCCTAGAGTTTCTGGACAAGACGGACGTTGAAGGGGGCGAGAGACTTGAATCCGACGATGAAGGCGAGGAAGTGGATTCGGAAGATGAAGATGCGGAGGATGTTGATAATTATACCAGTGAAGACAAGTCCAACGGCGTTCGATCTCTGAACCCATCGGGTGACCAGGACGAGGACGAATTTGAGCAGGAGGATGAGGAGGACGAGCTTGATGTGGATGAGGATGATGAGTATCAAGATGGGGTAACCATTAATGGCCACGGTGTAGCGCCTGGTCATATGGCTGCCAATGCTGCCGGTAATAGCTCGGATGATGATGAGGTGGATGATGAAGATGAGTGCGAGAATGCTGAGGTCCAGGATTTGGACGACGATGGCGATGAAGATAGCGATGAGGTTGTAGCTGAAGCCGACGATGACGATGCCGGTGCTGCAGAAGATGATGAAGATGATGGTGCCACTGAACATGCAAGTAGTGCCCCTGGAGAACTTGATGTTCAAGACGACGATGATAATGCAGACGATGAGGATGGGGAGCTAGGGGATGAAGAAGAAGACGATGAAGGAGTTGAGAACGATGCCGAAGACGATGGCGAAGATGAGGAAGAAGACTATGGTACGGAGTACTTGGTACAGCCTATTGGTAAGCCCGAAGATGAGGACGGTGGTAGTGATTTTGAACCGGTTGAAGATGGTGCTGAAGATGAGGATATTGACGAGGATGAAGATGATGACAATTACGTTGCTGGAAACCCTGCTGGAAACCAGAAGAGGAGTAGGGATGAAATAGATAGTGATTCGGAGGATGAAGAAAGAAATCCCAAGCGGCGATAA___ATATAAATTAATGTGGCTAATAGTTATTAGGTTTATCTTGTTCTTCTTCTTTTGACTATTTTATATGGTAGGTATTTTCGAGTGATAAAGCAACATGCAATGTTTGGGGATCACATT

Fln Alignment:

Contig219___KSGQNPSEIVSLTLDGALKGTPCRLPPAALFEQFPRLQQLSLASAGLTSLEGFPSLPHLKRLVLSDNKISGGLEHLVQAGLKSLEDLDLSNNRIHVLEDLVPLSQFNLVSLDLYECPVTRLPEYRARVFDIIKSLEFLDKTDVEGGERLXXXXXXXXXXXXXXXXXXXDNYTSEDKSNGVRSLNPSGXXXXXXXXXXXXXXXXXXXXXXXXXDGVTINGHGVAPGHMXXXXXXXXXXXXXXXXXXXXENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEHASSAPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYGTEYLVQPIGKPEDEDGGSDFEPVXXXXXXXXXXXXXXXDNYVAGNPAGNQKXXXXXXXXXXXXXXRNPKRR
A9NVZ4________________RGGQNPSEIVSLTLDGALKGTPCRLPPAALFEQFPRLQHLSLANAGLTSLEGFPSLPHLKRLVLSDNRISGGLEHLVQAGLKSLEDLDLSNNRIQVLEDLVPLSQFNLVSLDLYECPVTRLPEYRARVFDIIKSLEFLDKTDVEGGERLESDDEGEEVDSEDEEAEDVDNYTSEDKSNGVRSLNRPA-DQDEDDFEQEDEDELDVEEDEEYQDGVTINGHGVAPGHMAANAAGNSSDDDEVDDEDECENAEVQDLDDDGDEESDEVVAEADDDDAGAAEDDEDDGGTEHASSAPGELDVQDDDDNADDEDGELGDEEEDDEGVENDAEDDVEDEEEDYGTEYLVQPIGKPEDEDGGSDFEPVEDGAEDEDIDEDEDDDNYVAGNPAGNQKRSRDVIDSDSEDEERNHKRR

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
105	33	66			0.997452
108			33	66	0.997452
109	66			33	0.997452
223	66		33		0.997452
1180	87	12			0.992554
1183			87	12	0.992554
1189	85			14	0.993533
1190			85	14	0.993533
1200	14	85			0.993533
1201	14	85			0.993533
1248	14	85			0.993533
1249			85	14	0.993533
1552			80	20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain