SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene216

Length: 1709 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene216

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25656	57/60
SustainPine v2.0	sp_v2.0_unigene32635	3/60

Source	Descriptions	Term	Type	Identity
AutoFact	O-fucosyltransferase family protein [Arabidopsis thaliana] dbj\|BAB01710.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAO64166.1\| unknown protein [Arabidopsis thaliana] gb\|AAP04069.1\| unknown protein [Arabidopsis thaliana] dbj\|BAF00437.1\| hypotheti	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	o-fucosyltransferase family protein	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	65%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR004348	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKR2

Fln msg: Overlapping hits, possible frame ERROR between 955 and 952,

Fln protein: MGIDVRQVGGAILTLSMFAMLGNMIRNDHFSDTTTTLEVNYSNGSTPSEDAVYATSKGLLTKEKEPSNLWRTSEPALNPCWDDKITKSTERSVGLRSVGFVQFRLSNGPHYHVSQVADVIVVAKYLGATLVLPEIKGSSMDENSKFEEIYDAEKFIYSLRDVVKVARQLPNDKIAKRTVVIKIPHRVTEEYIAEKVEPLFRRTRSIMLSIFYPSIDMKIKEGSNPVIESVRCFGMYGVLEFHPDIKRVGDKMxxxLHDAEDGSLRHFVAIDLRMDILLEKGCENAGGSIRPGTKKCFGAQDIGIFLRKVGFQTDTPLYLTQSTWHENLNSLKDIFPNVYTKENIVPSDEKEQFFRSGNTEFERALDLYICSHSDVFVPAISGMFYANVVGQRIAAGRTQILVPTTKQNSVPMLSDSVSRYIIDKNHLAYSCLC*

Protein Length: 435

Fln nts: CCACAGATCTTGAATTATTTGATTTTGGCTTGTATTGCTACTTAAAGAGAGCTACCTGCATTGTTGGCATTGGCTCAAGCATTGCTTCTAGCAACTGCATGCCATTCAGATCTGCTCCACTTTAGTCTCAAGTAACTCGTTTGAGTCTTTGCGGAATCAGTAAGTTTGCTGGTGCCCTTTTGTGATTGCAACA_-_ATGGGTATAGATGTGAGGCAGGTTGGAGGAGCTATCTTGACACTGTCAATGTTTGCAATGCTGGGGAACATGATCAGGAATGACCACTTCTCTGATACCACTACAACTCTTGAGGTGAATTATTCAAACGGTTCAACGCCTTCAGAAGATGCAGTCTATGCTACTTCTAAGGGGCTTCTTACCAAGGAAAAGGAACCCAGCAATCTGTGGAGAACATCTGAACCCGCATTGAATCCATGTTGGGACGACAAAATCACAAAAAGCACGGAGAGGAGTGTGGGGTTGAGGAGTGTGGGGTTTGTGCAATTTAGGTTGTCAAATGGTCCTCACTATCATGTTTCACAGGTTGCAGATGTGATCGTTGTGGCAAAGTATTTAGGAGCAACATTGGTCCTCCCAGAGATCAAAGGAAGTTCAATGGATGAAAACAGTAAATTTGAGGAAATCTATGATGCTGAAAAGTTTATCTACAGTCTCCGTGATGTGGTTAAAGTGGCAAGGCAATTGCCTAATGACAAAATAGCAAAAAGAACTGTAGTAATTAAGATTCCACACAGGGTCACAGAAGAATATATAGCAGAAAAGGTGGAGCCATTATTTAGGAGGACAAGAAGTATCATGCTCAGTATCTTCTATCCATCTATAGATATGAAAATCAAAGAAGGGTCAAACCCTGTGATTGAATCTGTCCGTTGCTTTGGCATGTATGGTGTTCTTGAGTTTCACCCTGATATTAAAAGGGTGGGAGATAAAATGxxxxxxxxxTTACATGATGCAGAGGATGGATCACTAAGACACTTTGTTGCTATAGATTTGAGAATGGATATTTTGCTGGAAAAGGGCTGTGAAAATGCTGGTGGTAGCATCAGGCCGGGAACAAAAAAGTGTTTTGGAGCACAGGATATTGGCATCTTTTTGAGAAAAGTTGGGTTCCAAACAGATACTCCTCTCTATTTGACGCAATCCACATGGCATGAAAACCTTAATTCTCTCAAAGATATATTTCCAAATGTATATACCAAGGAAAATATTGTGCCATCTGATGAAAAGGAACAGTTTTTTCGTTCTGGAAATACAGAATTTGAAAGAGCCCTTGATCTTTATATCTGCTCTCACAGTGATGTGTTTGTTCCTGCAATTTCGGGTATGTTCTATGCAAATGTTGTTGGACAGAGAATTGCAGCTGGAAGGACGCAAATACTTGTACCCACAACAAAACAAAATTCTGTTCCTATGTTGTCAGATTCTGTATCACGTTACATTATTGACAAAAATCACTTGGCCTATTCATGTTTATGTTAA___GATTGCCGTGCCATTCAATTTTGAAAGCCAGCGGCAGCCAGAAAGTCCACTGAAGTTCCCCAGACTAGATTTCTTTTATGGATAAGAAATTGTGAGTTTGCTTCCCTAAGTTCAGAATTTGTACTAGCAAAGAGTCCTAAATTATGAGAAAATCAATTTCCTGAAAAATGAAGGCTCTGATGGGGTGGCCTAGAAACTGTAACATTAGTTATGCG

Fln Alignment:

Contig216___MGIDVRQVGGAILTLSMFAMLGNMIRNDHFSDTTTTLEVNYSNGSTPSEDAVYATSKGLLTKEKEPSNLWRTSEPALNPCWDDKITKSTERSVGLRSVGFVQFRLSNGPHYHVSQVADVIVVAKYLGATLVLPEIKGSSMDENSKFEEIYDAEKFIYSLRDVVKVARQLPNDKIAKRTVVIKIPHRVTEEYIAEKVEPLFRRTRSIMLSIFYPSIDMKIKEGSNPVIESVRCFGMYGVLEFHPDIKRVGDKMLxKLHDAEDGSLRHFVAIDLRMDILLEKGCENAGGSIRPGTKKCFGAQDIGIFLRKVGFQTDTPLYLTQSTWHENLNSLKDIFPNVYTKENIVPSDEKEQFFRSGNTEFERALDLYICSHSDVFVPAISGMFYANVVGQRIAAGRTQILVPTTKQNSVPMLSDSVSRYIIDKNHLAYSCLC
B8LKR2________________MGVDVRQIAGAILTLSMFVMLGNMIKKDHFSDTTATLEVNYSNGPAPSEDAAYATSKGVITKEKEPNNLWRTTEPALNPCWDDKITKSTEKSAG-----FVQFRLSNGPHYHVSQVADAIVVAKYLGATLVLPEIKGSSADENSKFEEIYDADKFINSLRDVVKVARQLPNDKIARRTVLVKIPHRVTEEYIEENVEPIFRRKRSIMLSIFFQSIDMKIKEGSNPGIESVRCFGMYGVLEFHPDIRRVGDKMLxKLHDAGDGSLRHFVAIDLRMDILLEKGCENAGGSIRSGTKKCFGAQDVGIFLRKVGFQTDTPLYLTQSTWHENLNSLKDIFPNVYTKENSMPSDEKEQLFHSGRTEFERALDFFICSNSDVFVPAISGMFYANVVGHRIAAGRTQILVPTTKQNSTALLSDSVSRYIIDKNHLAYSCLC

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
769	66		33		0.997452
918		20		80	0.995493
1044		33		66	0.997452
1045	33		66		0.997452
1047			66	33	0.997452
1153	10			90	0.90298
1176	10	90			0.90298
1182	90			10	0.90298
1209	10	90			0.90298
1213	90			10	0.90298
1222	22	77			0.999999
1225	77			22	0.999999
1226			77	22	0.999999
1281	16		83		0.994512
1282	83	16			0.994512
1295	14	85			0.993533
1296	14	85			0.993533
1309		11		88	0.923564
1310	11	88			0.923564
1312			88	11	0.923564
1325		12		87	0.992554
1326	12		87		0.992554
1425	83	16			0.994512
1465	14			85	0.993533
1466		14		85	0.993533
1501	16		83		0.994512
1516	20	80			0.995493
1581	25			75	0.996473
1582		25		75	0.996473
1585			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain