SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene213

Length: 768 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene213 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13778	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Rieske (2Fe-2S) domain-containing protein [Arabidopsis thaliana] gb\|AAG51832.1\|AC016163_21 unknown protein; 39989-38742 [Arabidopsis thaliana] gb\|AAM13030.1\| unknown protein [Arabidopsis thaliana] gb\|AAM64783.1\| unknown [Arabidopsis thaliana] gb\|AAM91334.	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	rieske domain containing expressed	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	84%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	84%
Blast2go	2 iron, 2 sulfur cluster binding	GO:0051537	Molecular Function	84%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	84%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Rieske [2Fe-2S] iron-sulphur domain	IPR017941	-	0.0	-
Sma3		IPR005806	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
152	33			66	0.997452
153	33		66		0.997452
154		66		33	0.997452
155		66	33		0.997452
156		66		33	0.997452
171	33			66	0.997452
186	66	33			0.997452
189		80		20	0.995493
562	25		75		0.996473
565		75	25		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain