SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene212

Length: 1152 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene212

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23607	26/30
SustainPine v2.0	sp_v2.0_unigene37451	4/30

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-conjugating enzyme E2 35 n=42 Tax=Embryophyta RepID=UBC35_ARATH	-	-	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	98%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	98%

Source	GOs	Term	Type	Identity
Blast2go	postreplication repair	GO:0006301	Biological Process	98%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	98%
Blast2go	root epidermal cell differentiation	GO:0010053	Biological Process	98%
Blast2go	response to iron ion	GO:0010039	Biological Process	98%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	98%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	98%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	98%
Blast2go	protein binding	GO:0005515	Molecular Function	98%
Blast2go	UBC13-MMS2 complex	GO:0031372	Cellular Component	98%
Blast2go	plasma membrane	GO:0005886	Cellular Component	98%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	0.0	-
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
235	16			83	0.994512
315	14	85			0.993533
316	14			85	0.993533
318		85	14		0.993533
339	20		80		0.995493
340			80	20	0.995493
377	25			75	0.996473
378	25	75			0.996473
379		75		25	0.996473
380	75		25		0.996473
387	25		75		0.996473
388	25		75		0.996473
389			75	25	0.996473
391			75	25	0.996473
413	33			66	1.0
414	33	66			1.0
417		66		33	1.0
493	12		87		0.992554
495		87		12	0.992554
605	11			88	0.923564
606		11		88	0.923564
607	11	88			0.923564
609			88	11	0.923564
690			77	22	0.999999
723		14		85	0.993533
725			85	14	0.993533
730	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain