SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene201

Length: 519 nt

UniGene Fasta

>biog3_v1.0_unigene201
GTTAACTGCAAGAGATTTGTATCGATTTAGGGTTTTTGCGTTGTCGAAGCTGGTCTGAAAATGCCTGGTCCAGACTTCAAAGCCGACAAAGAGTTCTGCAAAGACTTCTTAAAGAATTTTGTAGCAGAGAATGGAGTTACGAAGTACATGGATCTGCTGCAAGATGTTGCAAATAGGAAAATCCGTTCTGTTGATATTGAACTCGATGACATCAGCAGCTTCAAGGGGTTGGATGAGGAGTTTTTGGATAGAGTAAGAACAAATACTCGTCGGTACGTCGGCATTTTTGCGGAAGCGATAGATGAATTGTTGCCCGAACCCACTGAAGTTATTGCAAGGGACGATGATTATGATATTCTAATGAGACAGAGATTGGAAGAAGCGGGTGAAAATGCAGACAATGTAGACCCTTTTCAAAAGATGCCACCAGAAATCAAGCGTTTCTTGTAAGTTCAGATAGTGATTCACAACTCTATTGACTTTGGTGTGTCCTGTAAGTTCTATCTGCATCAGGAATTT

Ace file of the UniGene biog3_v1.0_unigene201

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17885	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	replication licensing factor MCM7 homologue [Zea mays] emb\|CAC44902.1\| replication licensing factor MCM7 homologue [Zea mays]	-	-	79%
FL-Next	sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress).	-	-	53%
Blast2go	protein prolifera	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	cellular process	GO:0009987	Biological Process	89%
Blast2go	protein binding	GO:0005515	Molecular Function	89%
Blast2go	cytoplasm	GO:0005737	Cellular Component	89%
Blast2go	nucleus	GO:0005634	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Mini-chromosome maintenance, DNA-dependent ATPase	IPR001208	-	-
Sma3	Mini-chromosome maintenance, conserved site	IPR018525	-	-
Sma3	Mini-chromosome maintenance complex protein 7	IPR008050	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: P43299

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 564 aas, your sequence is shorter than subject: 130 - 716

Fln protein: MPGPDFKADKEFCKDFLKNFVAENGVTKYMDLLQDVANRKIRSVDIELDDISSFKGLDEEFLDRVRTNTRRYVGIFAEAIDELLPEPTEVIARDDDYDILMRQRLEEAGENADNVDPFQKMPPEIKRFL*

Protein Length: 131

Fln nts: GTTAACTGCAAGAGATTTGTATCGATTTAGGGTTTTTGCGTTGTCGAAGCTGGTCTGAAA_-_ATGCCTGGTCCAGACTTCAAAGCCGACAAAGAGTTCTGCAAAGACTTCTTAAAGAATTTTGTAGCAGAGAATGGAGTTACGAAGTACATGGATCTGCTGCAAGATGTTGCAAATAGGAAAATCCGTTCTGTTGATATTGAACTCGATGACATCAGCAGCTTCAAGGGGTTGGATGAGGAGTTTTTGGATAGAGTAAGAACAAATACTCGTCGGTACGTCGGCATTTTTGCGGAAGCGATAGATGAATTGTTGCCCGAACCCACTGAAGTTATTGCAAGGGACGATGATTATGATATTCTAATGAGACAGAGATTGGAAGAAGCGGGTGAAAATGCAGACAATGTAGACCCTTTTCAAAAGATGCCACCAGAAATCAAGCGTTTCTTGTAAGTTCAGATAGTGATTCACAACTCTATTGACTTTGGTGTGTCCTGTAAGTTCTATCTGCATCAGGAATTT

Fln Alignment:

Contig201___MPGPDFKADKEFCKDFLKNFVAENGVTKYMDLLQDVANRKIRSVDIELDDISSFKGLDEEFLDRVRTNTRRYVGIFAEAIDELLPEPTEVIARDDDYDILMRQRLEEAGENADNVDPFQKMPPEIKRF
P43299________________MKDHDFDGDKGLAKGFLENFADANGRSKYMEILQEVSNRKIRAIQVDLDDLFNYKDESEEFLGRLTENTRRYVSIFSAAVDELLPEPTEAFP-DDDHDILMTQRADDGTDNPDVSDPHQQIPSEIKRY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain