SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene199

Length: 280 nt

UniGene Fasta

>biog3_v1.0_unigene199
AATGTTAAACTATTCCAAGATTTCACAGGCATTATGTTCTACCGGAATCTGGGATTTCCGAGGCTGGTGCGGCAAAGAACTCATATATTGGCCTAGATAGTGAGCAGGAAAGATTGCAGCAATTGCGTCTAGGAGAAAAGCAAGCTGCATTGAAGGTGAACGTAAATCCTCATTTCAGCAATGGATTCTCTTCAAGGTCATCTGAGTTTGACGTTTCAGTTTCATCAACTTCCGCTTCTTCCCAAAGCCAATCAGTGGCTTGGACTCCAAGGTCCACTAT

Ace file of the UniGene biog3_v1.0_unigene199

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4444	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein ABIL1, putative n=1 Tax=Ricinus communis RepID=B9RDZ9_RICCO	-	-	7.0e-29	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	protein abil1	-	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	76%
Blast2go	actin nucleation	GO:0045010	Biological Process	76%
Blast2go	protein binding	GO:0005515	Molecular Function	76%
Blast2go	SCAR complex	GO:0031209	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PS22

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 34 aas, your sequence is shorter than subject: 92 - 255

Fln protein: C*TIPRFHRHYVLPESGISEAGAAKNSYIGLDSEQERLQQLRLGEKQAALKVNVNPHFSNGFSSRSSEFDVSVSSTSASSQSQSVAWTPRST

Protein Length: 93

Fln nts: AATGTTAAACTATTCCAAGATTTCACAGGCATTATGTTCTACCGGAATCTGGGATTTCCGAGGCTGGTGCGGCAAAGAACTCATATATTGGCCTAGATAGTGAGCAGGAAAGATTGCAGCAATTGCGTCTAGGAGAAAAGCAAGCTGCATTGAAGGTGAACGTAAATCCTCATTTCAGCAATGGATTCTCTTCAAGGTCATCTGAGTTTGACGTTTCAGTTTCATCAACTTCCGCTTCTTCCCAAAGCCAATCAGTGGCTTGGACTCCAAGGTCCACTAT

Fln Alignment:

Contig199___TIPRFHRHYVLPESGISEAGAAKNSYIGLDSEQERLQQLRL
C0PS22________________TIPRFHRHYVLPEAGISGAGAGKNSYIGLDSEQERLQLLHL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
169		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain