SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene198

Length: 563 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene198
GATCCAGTCATCGAAAATCTGTGCACAGGCCATGGAGTTGTGTGTGAAATGCAACCAACATGTTATAAATGATAGTTACTACCCCGCATTGAAAACTTTAGACTCGATAGAAAGAGATTACTTGCATAGAATTCCGGCGAAGGCGCTCCAGCAAATGCTAGAAAAGAAGATCCCTGAAATCAAATCCCACATCGAGAAAAGAGTGAACAAGGAATTCAATGATTGGCTAGTGAAGATTAGGAGTACTGCTAAAGAAATTGGTCAGTTGGCAATCGGGCAAGCTTCTTCAGCTCGGCAGAGAGAAGAGGAGCTGCGAGGCCGGCAAAAGCAGGCAGAGGAACAGAGCAGGTCAGGTGTAAGGGAATGTGTATATGCTTTAGACACGGAGGATACGGAAGATGCTGATTCTGTTTTGAAATTCGACATCACTCCAGTTTATAGGGCACACCATATCCAGACTTGTCTTGGCCTCCAAGACCAGTTCCGGGATTACTACTATACAAATCGTCAGCTGCAGCTTAATTCAGATTTGCAAATCTCATCTGTGCAGCCTTTTCTACATT

Ace file of the UniGene biog3_v1.0_unigene198 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11087	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	pfam04091, Sec15, Exocyst complex subunit Sec15-like	-	-	34%
FL-Next	sp=Probable exocyst complex component 6; Arabidopsis thaliana (Mouse-ear cress).	-	-	59%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	pollen germination	GO:0009846	Biological Process	79%
Blast2go	vesicle docking involved in exocytosis	GO:0006904	Biological Process	79%
Blast2go	pollen tube growth	GO:0009860	Biological Process	79%
Blast2go	exocyst	GO:0000145	Cellular Component	79%
Blast2go	cytosol	GO:0005829	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	DNA-binding SAP	IPR003034	-	-
Sma3	Poly(ADP-ribose) polymerase, regulatory domain	IPR004102	-	-
Sma3	Exocyst complex subunit Sec15-like	IPR007225	-	-
Sma3	WGR domain	IPR008893	-	-
Sma3	Poly(ADP-ribose) polymerase, catalytic domain	IPR012317	-	-
Sma3	Vacuolar protein sorting-associated protein 51	IPR014812	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LXX6

Fln msg: Distance to subject end: 474 aas, your sequence is shorter than subject: 187 - 790

Fln protein: IQSSKICAQAMELCVKCNQHVINDSYYPALKTLDSIERDYLHRIPAKALQQMLEKKIPEIKSHIEKRVNKEFNDWLVKIRSTAKEIGQLAIGQASSARQREEELRGRQKQAEEQSRSGVRECVYALDTEDTEDADSVLKFDITPVYRAHHIQTCLGLQDQFRDYYYTNRQLQLNSDLQISSVQPFLH

Protein Length: 188

Fln nts: GATCCAGTCATCGAAAATCTGTGCACAGGCCATGGAGTTGTGTGTGAAATGCAACCAACATGTTATAAATGATAGTTACTACCCCGCATTGAAAACTTTAGACTCGATAGAAAGAGATTACTTGCATAGAATTCCGGCGAAGGCGCTCCAGCAAATGCTAGAAAAGAAGATCCCTGAAATCAAATCCCACATCGAGAAAAGAGTGAACAAGGAATTCAATGATTGGCTAGTGAAGATTAGGAGTACTGCTAAAGAAATTGGTCAGTTGGCAATCGGGCAAGCTTCTTCAGCTCGGCAGAGAGAAGAGGAGCTGCGAGGCCGGCAAAAGCAGGCAGAGGAACAGAGCAGGTCAGGTGTAAGGGAATGTGTATATGCTTTAGACACGGAGGATACGGAAGATGCTGATTCTGTTTTGAAATTCGACATCACTCCAGTTTATAGGGCACACCATATCCAGACTTGTCTTGGCCTCCAAGACCAGTTCCGGGATTACTACTATACAAATCGTCAGCTGCAGCTTAATTCAGATTTGCAAATCTCATCTGTGCAGCCTTTTCTACATT

Fln Alignment:

Contig198___IQSSKICAQAMELCVKCNQHVINDSYYPALKTLDSIERDYLHRIPAKALQQMLEKKIPEIKSHIEKRVNKEFNDWLVKIRSTAKEIGQLAIGQASSARQREEELRGRQKQAEEQSRSGVRECVYALDTEDTEDADSVLKFDITPVYRAHHIQTCLGLQDQFRDYYYTNRQLQLNSDLQISSVQPFL
Q9LXX6________________IKMSKICVQALELCVKCNSYISEGQFYHALKTMDLIEKSYLKLIPLKVLKLVIERRIPVIKTHIEKKVCSQFNEWLVHIRSSSKNIGQTAIGLTASARQREEEMLERQRRAEEQNTGGLGELAYTLDVEDSEQ-DSVLKFDLTPLYRAYHIHTILGVPERFRDYYYENRLLQLQSDLQITYTQPFV

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
204	33	66			0.997452
205	33			66	0.997452
207	66		33		0.997452
208		66		33	0.997452
281	75	25			0.996473
282		25	75		0.996473
284			25	75	0.996473
454	33	66			0.997452
455		33		66	0.997452
458		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain