SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene189

Length: 609 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene189 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9675	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	oligopeptidase B [Arabidopsis thaliana] gb\|AAD50051.1\|AC007980_16 Similar to oligopeptidases [Arabidopsis thaliana] gb\|AAL84967.1\| At1g50380/F14I3_27 [Arabidopsis thaliana] gb\|AEE32542.1\| oligopeptidase B [Arabidopsis thaliana]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Zea mays (Maize).	-	-	85%
Blast2go	oligopeptidase b	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	78%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3		IPR000097	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Peptidase S9, prolyl oligopeptidase, catalytic domain	IPR001375	-	-
Sma3	Peptidase S9A, prolyl oligopeptidase	IPR002470	-	-
Sma3	Peptidase S9A/B/C, oligopeptidase, N-terminal beta-propeller	IPR004106	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
206	80		20		0.995493
211		80	20		0.995493
214	20		80		0.995493
216		20		80	0.995493
217		20		80	0.995493
218	20			80	0.995493
219	20			80	0.995493
333	33		66		0.997452
334	33			66	0.997452
335		66		33	0.997452
336	66		33		0.997452
342	66		33		0.997452
343	25	75			0.996473
344	25	75			0.996473
347		75		25	0.996473
472		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain