SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene186

Length: 370 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene186
AATGTGGATGAGTGCGGGATTTCTGGGGCATCTGTGGCAAAGTCTGTAGGTGATCAAAGTGCTTTGGTTCATAAAGTTCAACAAAGGAACTTTCGGGTGACCTTGGAAGATATAAAGATATAAAGAGCCATGTCGGGAGAAGTAAATTCCAAAGGTTGTATGGAGCAATTTTCTCTGCTGACAACGATGAAAAAATTCAAAACATAATTTCAAAAGTTGGAGATGAATCTGTTATTAAGTTTTGTAATGCTGTTCTGAAATCACTGGAAAGAGAAGATGAAGATAAGGCACTGAGTTTATTTCAATTGATGAGGCAGAGTGGGAAGGCAAGGGGAAACCTACCTGCTTATAACATTGCCTTTAGGACATT

Ace file of the UniGene biog3_v1.0_unigene186 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15188	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	puative protein [Arabidopsis thaliana] emb\|CAB79800.1\| puative protein [Arabidopsis thaliana]	-	-	1.99993e-41	43%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	46%
Blast2go	pentatricopeptide repeat-containing protein	-	-	0.0	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	59%

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Cdk-activating kinase assembly factor (MAT1)	IPR004575	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7U7F9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 718 aas, your sequence is shorter than subject: 122 - 900

Fln protein: CG*VRDFWGICGKVCR*SKCFGS*SSTKELSGDLGRYKDIKSHVGRSKFQRLYGAIFSADNDEKIQNIISKVGDESVIKFCNAVLKSLEREDEDKALSLFQLMRQSGKARGNLPAYNIAFRT

Protein Length: 123

Fln nts: AATGTGGATGAGTGCGGGATTTCTGGGGCATCTGTGGCAAAGTCTGTAGGTGATCAAAGTGCTTTGGTTCATAAAGTTCAACAAAGGAACTTTCGGGTGACCTTGGAAGATATAAAGATATAAAGAGCCATGTCGGGAGAAGTAAATTCCAAAGGTTGTATGGAGCAATTTTCTCTGCTGACAACGATGAAAAAATTCAAAACATAATTTCAAAAGTTGGAGATGAATCTGTTATTAAGTTTTGTAATGCTGTTCTGAAATCACTGGAAAGAGAAGATGAAGATAAGGCACTGAGTTTATTTCAATTGATGAGGCAGAGTGGGAAGGCAAGGGGAAACCTACCTGCTTATAACATTGCCTTTAGGACATT

Fln Alignment:

Contig186___VGDESVIKFCNAVLKSLEREDEDKALSLFQLMRQSGKARGNLPAYNIAFR
D7U7F9________________IGPELSVERCNAILKGLERCSDSKTMKFFEWMRENGKLEGNVSAYNLALR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain