SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene174

Length: 486 nt

UniGene Fasta

>biog3_v1.0_unigene174
GAACCTCTTGTCAAAATTGGTTCTTGTACAGGCACAAAAAGCAGCCACTGGACGGGAAGTCTTCCATTCAGATTTTTTAACGCCTCCTGTTCTAGAGGATGCGCTATTGGCAATAAAGAAGCTATCAGATGTGGAGACCTTGGTGCAAGGTGGCTATCCACAGGCTGAACGCTGTCGCCTATCAATTGGACATCCTGATGTTCTCTCTTCTGCTTTAGATGCAGTTGCTGCATTAAGCATCTCAGGAAACTTTACTTTTGATCCTGCATTACATGGTGATTTTCTTGGAGCTGTTCTGGCTACAGGCATTAGAAGGGAAAAAATTGGTGATATTCTCTTGCAGGGTGAGAAAGGGGCTCAAGTCAATAGTTGTTCCAGAAGCTTGTCGATTACCTAGTGTCATCACTCACACAGGTTCGCAATGTTCCCGTATCTTGTTCACCTATACCATTACTTGCCTTGGAATTTCAACCACCAAGGACAAAG

Ace file of the UniGene biog3_v1.0_unigene174

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7892	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	RNA-binding S4 domain-containing protein [Arabidopsis thaliana] gb\|AAL24321.1\| Unknown protein [Arabidopsis thaliana] gb\|AAN65106.1\| Unknown protein [Arabidopsis thaliana] gb\|AAO00774.1\| Unknown protein [Arabidopsis thaliana] gb\|AAP42730.1\| At1g53120 [Ara	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	rna-binding s4 domain-containing protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	RNA binding	GO:0003723	Molecular Function	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%
Blast2go	chloroplast	GO:0009507	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Photosystem II S4	IPR017506	-	0.0	-
Sma3	RNA-binding S4 domain	IPR002942	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NS86

Fln msg: Overlapping hits, possible frame ERROR between 364 and 349, Distance to subject end: 84 aas, your sequence is shorter than subject: 162 - 332

Fln protein: NLLSKLVLVQAQKAATGREVFHSDFLTPPVLEDALLAIKKLSDVETLVQGGYPQAERCRLSIGHPDVLSSALDAVAALSISGNFTFDPALHGDFLGAVLATGIRREKIGDILLQGxxxxxxx*LFQKLVDYLVSSLTQVRNVPVSCSPIPLLALEFQPPRTK

Protein Length: 163

Fln nts: GAACCTCTTGTCAAAATTGGTTCTTGTACAGGCACAAAAAGCAGCCACTGGACGGGAAGTCTTCCATTCAGATTTTTTAACGCCTCCTGTTCTAGAGGATGCGCTATTGGCAATAAAGAAGCTATCAGATGTGGAGACCTTGGTGCAAGGTGGCTATCCACAGGCTGAACGCTGTCGCCTATCAATTGGACATCCTGATGTTCTCTCTTCTGCTTTAGATGCAGTTGCTGCATTAAGCATCTCAGGAAACTTTACTTTTGATCCTGCATTACATGGTGATTTTCTTGGAGCTGTTCTGGCTACAGGCATTAGAAGGGAAAAAATTGGTGATATTCTCTTGCAGGGTxxxxxxxxxxxxxxxxxxxxxTAGTTGTTCCAGAAGCTTGTCGATTACCTAGTGTCATCACTCACACAGGTTCGCAATGTTCCCGTATCTTGTTCACCTATACCATTACTTGCCTTGGAATTTCAACCACCAAGGACAAAG

Fln Alignment:

Contig174___KLVLVQAQKAATGREVFHSDFLTPPVLEDALLAIKKLSDVETLVQGGYPQAERCRLSIGHPXXXXXXXXXXXXXXISGNFTFDPALHGDFLGAVLATGIRREKIGDILLQGxxxxxx*LFQKLVDYLVSSLTQVRNVPVSCSPIPLLALEFQPPRTK
A9NS86________________KLILVQAQKAASGREIFHSDFLMPPVVEDALSAIKKLSDVEALVQGGYPQAERCRLSIGHTDVISSAPDAVSALSISGNFTFDPASHGDFLGAVLATGIRREKVGDILLQGxxxxxxIVVPELVDYIVSSLTQVHNVPVSCSPIPLLALEFQPPRTK

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
207	33	66			0.997452
208	33			66	0.997452
210		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain