SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene143

Length: 799 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene143

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2298	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	Protein binding protein n=3 Tax=Andropogoneae RepID=B6SPB5_MAIZE	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein binding protein	-	-	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	69%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	69%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	69%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	69%
Blast2go	protein binding	GO:0005515	Molecular Function	69%
Blast2go	cytosol	GO:0005829	Cellular Component	69%
Blast2go	mitochondrion	GO:0005739	Cellular Component	69%
Blast2go	nucleus	GO:0005634	Cellular Component	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLN0

Fln msg: Overlapping hits, possible frame ERROR between 73 and 70, query STOP codon is far from subject stop. Distance to subject end: 23 aas, your sequence is shorter than subject: 244 - 334

Fln protein: PGFWIIGLKVFEEAEKLVTKLSxxxHMKACISRAREHLGETGDREDTSAHQQQNTDSRFLFEGQLTVGEEPPPPRWLAAQNLLTALAIGSQSSGTTAESSENLAHENNASQSNEEGSTQNFLEQVVNNIQGIINLENDLDSAIEAALQEVGSGPRVPPPASKEVVAKLPIIDVTEQVLARMGKDTECAVCREDLIVGDKMQELPCKHLFHPNCLKPWLDEHNSCPICRYELQTDDLEYEFKKT*

Protein Length: 245

Fln nts: CCCTGGTTTCTGGATAATTGGATTGAAGGTCTTTGAAGAAGCTGAGAAATTGGTTACTAAACTTTCTxxxxxxxxxCACATGAAGGCATGCATTAGTAGAGCTCGTGAACATTTGGGAGAGACAGGAGATAGAGAAGACACCTCAGCACATCAACAGCAAAATACAGATTCAAGATTCCTTTTTGAAGGGCAGTTGACTGTTGGAGAAGAGCCGCCACCACCAAGATGGCTTGCTGCTCAAAATTTGCTAACAGCTCTTGCCATCGGCAGTCAGTCAAGTGGCACAACAGCAGAATCTTCTGAAAATCTTGCGCATGAGAATAATGCATCACAGAGCAATGAAGAAGGGTCCACTCAAAACTTTCTAGAGCAAGTTGTGAACAATATTCAAGGGATCATTAATCTTGAAAATGATCTTGACAGTGCTATTGAAGCTGCTTTGCAGGAAGTTGGCAGTGGACCTCGTGTTCCACCTCCAGCATCAAAGGAAGTGGTTGCGAAATTGCCGATTATAGATGTTACAGAGCAGGTTTTAGCACGAATGGGAAAAGACACAGAATGTGCTGTATGCAGGGAGGACTTGATTGTCGGTGACAAGATGCAGGAGTTGCCGTGCAAGCACTTGTTTCATCCCAATTGCCTCAAGCCATGGCTGGATGAGCACAATTCTTGTCCCATATGTAGGTATGAGTTGCAGACTGATGACCTTGAATATGAATTTAAAAAGACGTGAAAAGGAGGCTGAAGAAGAAAGAAAGGGTGACTGCAAATGCTATTCGTGGAGGGGAATATATGTACGT

Fln Alignment:

Contig143___PGFWIIGLKVFEEAEKLVTKLSExNHMKACISRAREHLGETGDREDTSAHQQQNTDSRFLFEGQLTVGEEPPPPRWLAAQNLLTALAIGSQSSGTTAESSENLAHENNASQSNEEGSTQNFLEQVVNNIQGIINLENDLDSAIEAALQEVGSGPRVPPPASKEVVAKLPIIDVTEQVLARMGKDTECAVCREDLIVGDKMQELPCKHLFHPNCLKPWLDEHNSCPICRYELQTDDLEYE
A9NLN0________________PGFWIIGLKVFEEAEKLVSKPSExNHMKACISRAHEHLGETGDREDASAHQQQNTDSRFLFEGQLTVGPEPPPPRWLAAQNLLTDFAIGNPASSTTVESSENLVHENNASEGNAEGSTENFLEQVVNNLQGIINLENDLDSAIEAALQEVGSGPRVPPPASKEVVAKLPIIDVTDQVLAGMGKDTECAVCREHLVVGDKMQELPCKHLFHPNCLKPWLDEHNSCPICRYELQTDDLEYE

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
398	25			75	0.996473
399		25		75	0.996473
401	66			33	0.997452
710	20		80		0.995493
711	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain