SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene136

Length: 1696 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene136

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6536	58/58

Source	Descriptions	Term	Type	Identity
AutoFact	RNA polymerase I-associated factor PAF67 [Arabidopsis thaliana] ref\|NP_680223.1\| RNA polymerase I-associated factor PAF67 [Arabidopsis thaliana] gb\|AED93480.1\| RNA polymerase I-associated factor PAF67 [Arabidopsis thaliana] gb\|AED93481.1\| RNA polymerase I	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	eukaryotic translation initiation factor 3 subunit l-like	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	87%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Protein-tyrosine phosphatase, active site	IPR016130	-	-
Sma3	Translation initiation factor 3 complex, subunit L	IPR019382	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADC8

Fln msg: your sequence is longer than subject: 519 - 233

Fln protein: MAYESYGRDYEETYDDGVEQQESTYDPLFVPDAVRTFVVFLYRHIREKNVYEIHQMYEGSFQKLSERMFKESPWPSVEAIAPFVDNDHVFCLLYREMWFRHLYARLSPNLKQRVESWDNYCSLFQVIVHGVVNMQLPNQWLWDMIDEFIYQFQSFCQYRAKLRNKTDQELAFLRECDEVWNVYGVLNYLQALVEKSVIIQILEEEKEGNLTFTATDGYDYNGGSNVLKVLGYFSIIGLLRVHCLLGDYYSGLKCLAPIDVNQTGVYNSVIGSHITTIYYYGFANLMLRRYVEAIRAFNQVLLYIIKTKQFHQKSPQFDQILKKNEQMYALLAICLSICPQMKLVEENVNNQLKEKYGEKMARMQRSDEAVYDELFSYACPKFITPSVPNYDEALVNYNQDAYRLQLKLFLSEVRQQQLLSGLRSFLKLYTSISMEKLANFMDVDESTLRTTLMTYKHKTHAIDHDGRIISNADVDFYIDEDIVHIVESKSSKLYADNFMRHIIKCEEIISDLDRVKLE*

Protein Length: 520

Fln nts: AATGTGTTCCTCGAGCTTGAGAGAGAAGGCACGACCCATTTCGTTTTTCAACAGTGACAGGCAACCCATTAGCTCAGTTTCATCTATTC_-_ATGGCGTACGAAAGCTATGGGCGCGATTATGAGGAGACTTACGACGACGGCGTGGAACAGCAGGAATCCACCTACGATCCTCTATTCGTTCCAGACGCTGTGAGGACCTTCGTGGTATTTCTCTACAGACATATCAGAGAAAAAAATGTCTACGAAATCCACCAGATGTACGAGGGCAGCTTCCAGAAGCTGAGCGAACGAATGTTCAAGGAATCTCCATGGCCCTCGGTGGAGGCCATTGCTCCATTCGTCGACAACGATCATGTATTCTGTTTGCTTTACAGAGAAATGTGGTTCCGCCATCTTTATGCGAGGCTGTCCCCAAATCTGAAGCAGCGGGTCGAATCCTGGGACAATTATTGTAGTCTGTTTCAGGTCATTGTTCACGGCGTGGTTAACATGCAGTTACCGAATCAATGGCTCTGGGATATGATCGATGAGTTTATTTATCAGTTCCAGTCGTTTTGTCAGTATCGTGCTAAGCTCAGGAACAAGACTGATCAAGAACTAGCTTTTCTGCGGGAATGTGATGAGGTGTGGAATGTCTATGGTGTGCTGAACTATTTACAGGCTCTTGTTGAGAAGTCTGTGATCATCCAGATCCTAGAGGAAGAGAAAGAAGGTAATTTAACATTTACTGCAACTGATGGATATGACTACAATGGAGGAAGCAATGTTCTGAAGGTTCTGGGGTACTTTAGTATTATTGGTCTACTTCGTGTACATTGCCTTCTTGGAGATTATTACAGTGGACTCAAGTGCTTGGCACCTATAGATGTTAACCAGACAGGTGTCTACAATTCAGTGATTGGAAGCCATATCACAACTATTTATTATTATGGATTCGCCAACCTTATGTTGAGAAGGTATGTTGAGGCAATACGGGCCTTCAATCAAGTTCTGTTGTATATAATAAAGACCAAACAATTCCATCAAAAGTCTCCACAGTTTGACCAAATTCTGAAGAAAAATGAACAGATGTATGCTCTATTGGCTATATGCCTCTCTATCTGTCCACAAATGAAGCTTGTTGAGGAAAATGTGAACAATCAGCTGAAAGAGAAGTATGGAGAGAAGATGGCAAGAATGCAGAGAAGTGATGAGGCTGTGTATGACGAACTTTTTTCATATGCCTGTCCTAAATTTATTACTCCTTCAGTACCAAACTATGATGAAGCTCTTGTAAATTATAACCAGGATGCATATAGGCTTCAGTTGAAGCTGTTCTTATCAGAAGTAAGACAGCAACAGCTTTTGTCAGGTCTACGGAGCTTCTTGAAGTTGTATACATCCATCTCAATGGAAAAGCTCGCGAATTTTATGGATGTTGATGAGTCTACCTTAAGGACAACTCTTATGACATACAAGCATAAGACTCATGCAATTGATCATGATGGAAGAATTATATCAAATGCAGATGTTGACTTTTATATTGATGAGGATATTGTTCATATTGTTGAATCAAAGTCTTCAAAGCTATACGCTGATAACTTTATGCGTCACATTATCAAGTGTGAAGAGATTATTAGTGATTTGGACAGAGTTAAGCTTGAATAA___GATGGTTGCTGTTTTTGCATTATGGAAATGCCAGCTGTAATGAGGTCAAA

Fln Alignment:

Contig136___MLRRYVEAIRAFNQVLLYIIKTKQFHQKSPQFDQILKKNEQMYALLAICLSICPQMKLVEENVNNQLKEKYGEKMARMQRSDEAVYDELFSYACPKFITPSVPNYDEALVNYNQDAYRLQLKLFLSEVRQQQLLSGLRSFLKLYTSISMEKLANFMDVDESTLRTTLMTYKHKTHAIDHDGRIISNADVDFYIDEDIVHIVESKSSKLYADNFMRHIIKCEEIISDLDRVKLE
D5ADC8________________MLRRYVEAIRAFNQVLLYIVKTKQFHQKSPQFDQILKKNEQMYALLAVCLSICPQMKLVEENVNNQLKEKYGEKMARMQRSDEAVYDELFSYACPKFITPSVPNYDEPLVNYNQDAYRLQLKLFLSEVRQQQLLSGLRSFLKLYTSISMEKLANFMDIDESTLRTTLMTYKHKTHAIDHDGRIISNADVDFYIEEDIVHIIESKSAKLYADNFMRHIIKCEEIISDLDRVKLE

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
270	14	85			0.993533
271	14			85	0.993533
273		85	14		0.993533
274		85		14	0.993533
358	12			87	0.992554
360		87	12		0.992554
366	12		87		0.992554
368	12			87	0.992554
420	37		62		1.0
450	20			80	0.999996
526		11	88		0.923564
529			88	11	0.923564
642		16		83	0.994512
643	16		83		0.994512
645			83	16	0.994512
666	14			85	0.993533
736	14		85		0.993533
740			85	14	0.993533
784	16			83	0.994512
787	16			83	0.994512
922		10		90	0.90298
1026	88			11	0.923564
1027	88			11	0.923564
1060	90			10	0.90298
1061	90		10		0.90298
1068		10	90		0.90298
1139	90			10	0.90298
1185	88	11			0.923564
1187			88	11	0.923564
1191	22			11	0.999999
1192			11	88	0.923564
1197	12	87			0.992554
1199			87	12	0.992554
1201	12		87		0.992554
1202		12		87	0.992554
1205			85	14	0.993533
1212	16	83			0.994512
1213	25			75	0.996473
1215			25	75	0.996473
1271	20			80	0.995493
1272		80	20		0.995493
1286	20	80			0.995493
1289			80	20	0.995493
1290			80	20	0.995493
1305	20	80			0.995493
1326			83	16	0.994512
1327	83			16	0.994512
1522	12			87	0.992554
1525	87		12		0.992554
1540	14		85		0.993533
1551	16			83	0.994512
1552		16	83		0.994512
1554	83			16	0.994512
1667	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain