SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene133

Length: 213 nt

UniGene Fasta

>biog3_v1.0_unigene133
AAGTGTCAGTGGTGAGATGGTTTTTGAGGAAGGAGAAACATCTGCCTCACCATTCTCAATGAGTGCATCAGATTTCCCTCCCTTACCTGGCTCCCATTCAGGAAATAGGCAACATGGGAAGAGCAGGCCATTAAGGCAATGAAATGTTCAAATAGATTGGAAGGTATGAATTATTGTAATGGTGGATTCTGTTTCTGAAGTTGCCTATGAAGC

Ace file of the UniGene biog3_v1.0_unigene133

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene556	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] gb\|AAD20129.1\| hypothetical protein [Arabidopsis thaliana] gb\|AAQ65186.1\| At2g17970 [Arabidopsis thaliana] dbj\|BAD43754.1\| hypothetical protein [Arabidopsis thaliana]	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	2-oxoglutarate and fe -dependent oxygenase-like protein	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	0.0	70%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLT0

Fln msg: your sequence is shorter than subject: 47 - 496

Fln protein: SVSGEMVFEEGETSASPFSMSASDFPPLPGSHSGNRQHGKSRPLRQ*

Protein Length: 48

Fln nts: AAGTGTCAGTGGTGAGATGGTTTTTGAGGAAGGAGAAACATCTGCCTCACCATTCTCAATGAGTGCATCAGATTTCCCTCCCTTACCTGGCTCCCATTCAGGAAATAGGCAACATGGGAAGAGCAGGCCATTAAGGCAATGA___AATGTTCAAATAGATTGGAAGGTATGAATTATTGTAATGGTGGATTCTGTTTCTGAAGTTGCCTATGAAGC

Fln Alignment:

Contig133___SVSGEMVFEEG-ETSASPFSMSASDFPPLPGSHSGNRQHGKSRPLRQ
B8LLT0________________SVSGEMILEGGGETSTSPFSMNAVDFPPLHGSHSGNRQHGKSRPLRQ

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
116		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain