SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene129

Length: 478 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene129
CAGGCGGTGGCACACAACAGAGCCTGAGGAAGGCATTGGGTGCACTGAAAGATACAACGACAGTTAGTCTTGCCAAAGTGAACAGTGATTACAAGGATCTAGACATTGCTATTGTGAAGGCCACAAATCATGTTGAGCGGCCAGCAAAGAAAAGCATATCCGAATTATTTTTGCAGCAACATCGGCTGCAAGGCCTCGGGCAGATGTGGCATATTGCATCCATGCTCTTGCAAGACGTCTTGCCAAGACTCACAACTGGGCGGTTGCGTTAAAAACCTTAATTGTTATCCATCGAGCTTTGAGAGAGGTTGACCCCACGTTTCGGGAGGAATTGATCAATTATAGTAGATCCAGAGGCCACATTCTCAATTTATCTTACTTCAAGGATGATTCAAGTCCAAATGCTTGGGACTATTCAGCGTGGGTACGTGCATATGCATTGTTCCTGGAAGAACGATTGGAATGCTACCGTGACATT

Ace file of the UniGene biog3_v1.0_unigene129 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8042	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative clathrin assembly protein [Arabidopsis thaliana] sp\|Q9LHS0.1\|CAP10_ARATH RecName: Full=Putative clathrin assembly protein At5g35200 dbj\|BAA98205.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL91173.1\| unknown protein [Arabidopsis thalian	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	clathrin assembly	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	clathrin coat assembly	GO:0048268	Biological Process	76%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	76%
Blast2go	1-phosphatidylinositol binding	GO:0005545	Molecular Function	76%
Blast2go	clathrin binding	GO:0030276	Molecular Function	76%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	76%
Blast2go	clathrin coat	GO:0030118	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	ANTH	IPR011417	-	-
Sma3	Clathrin adaptor, phosphoinositide-binding, GAT-like	IPR014712	-	-
Sma3	ENTH/VHS	IPR008942	-	-
Sma3	Epsin-like, N-terminal	IPR013809	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKD7

Fln msg: Overlapping hits, possible frame ERROR between 152 and 143, Distance to subject end: 385 aas, atg_distance in limit (1-15): atg_distance = 4, W2: There is no M at the beginning, your sequence is shorter than subject: 159 - 547

Fln protein: GGGTQQSLRKALGALKDTTTVSLAKVNSDYKDLDIAIVKATNHVERxxxxxHIRIIFAATSAARPRADVAYCIHALARRLAKTHNWAVALKTLIVIHRALREVDPTFREELINYSRSRGHILNLSYFKDDSSPNAWDYSAWVRAYALFLEERLECYRDI

Protein Length: 160

Fln nts: CAGGCGGTGGCACACAACAGAGCCTGAGGAAGGCATTGGGTGCACTGAAAGATACAACGACAGTTAGTCTTGCCAAAGTGAACAGTGATTACAAGGATCTAGACATTGCTATTGTGAAGGCCACAAATCATGTTGAGCGGxxxxxxxxxxxxxxxCATATCCGAATTATTTTTGCAGCAACATCGGCTGCAAGGCCTCGGGCAGATGTGGCATATTGCATCCATGCTCTTGCAAGACGTCTTGCCAAGACTCACAACTGGGCGGTTGCGTTAAAAACCTTAATTGTTATCCATCGAGCTTTGAGAGAGGTTGACCCCACGTTTCGGGAGGAATTGATCAATTATAGTAGATCCAGAGGCCACATTCTCAATTTATCTTACTTCAAGGATGATTCAAGTCCAAATGCTTGGGACTATTCAGCGTGGGTACGTGCATATGCATTGTTCCTGGAAGAACGATTGGAATGCTACCGTGACATT

Fln Alignment:

Contig129___GGGTQQSLRKALGALKDTTTVSLAKVNSDYKDLDIAIVKATNHVERPxxxKHIRIIFAATSAARPRADVAYCIHALARRLAKTHNWAVALKTLIVIHRALREVDPTFREELINYSRSRGHILNLSYFKDDSSPNAWDYSAWVRAYALFLEERLECYR
B8LKD7________________GGGTQQSLRKALGALKDTTTVSLAKVNSDYKDLDIAIVKATNHVERPxxxKHIRIIFAATSATRPRADVAYCIHALARRLAKTHNWAVALKTLIVIHRALREVDPTFREELINYSRSRGHILNLSYFKDDSSSNAWDYSAWVRSYALFLEERLECYR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain