SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene122

Length: 1576 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene122

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25117	33/33

Source	Descriptions	Term	Type	Identity
AutoFact	putative methyltransferase PMT3 [Arabidopsis thaliana] ref\|NP_001031639.1\| putative methyltransferase PMT3 [Arabidopsis thaliana] sp\|Q93YV7.1\|PMT3_ARATH RecName: Full=Probable methyltransferase PMT3 gb\|AAL24095.1\| putative ankyrin protein [Arabidopsis tha	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	methyltransferase pmt3	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	79%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	79%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	79%
Blast2go	nucleus	GO:0005634	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 10	IPR001000	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Cytokine-induced anti-apoptosis inhibitor 1	IPR007785	-	-
Sma3		IPR017909	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKS3

Fln msg: your sequence is shorter than subject: 460 - 637

Fln protein: MLPHTHLAEEKSDQNWMVVNGDKVNFPGGGTHFHYGADKYIAALAKMLKFPHESLNNSGKIRTVLDVGCGVASFGAYLLPLDIVAMSLAPNDVHQNQIQFALERGIPATLGVLGTMRLPYPSRSFEFAHCSRCRIDWLQRDGILLLELDRLLKPGGYFAYSSPEAYMKDAEDLQIWNAMSNLVKRMCWKIASKRDQTVIWVKPLTNSCYLKRAPDTKPPLCSPNDDPDSVWQVPMKACITPYTDQMHHAKGSGLVPWPKRLTTPPPRLEDLNVGEEEFKKDTAVWHQRVKYYLEQMKPMIGNDTFRNIMDLRANLGGFAAALIDKDVWVMNVVPVNASNTLKVIYDRGLMGTIHDWCESFSTYPRTYDLLHAWTLFSDIYEKGCSVEDLLLEMDRILRPTGFVIIRDKPSMIKYITNYLPVLKWDSWKLIVNSESDPLSSDDETILFAQKQLWIPDESQ*

Protein Length: 461

Fln nts: AATGTTACCTCATACACATCTTGCCGAGGAGAAATCAGATCAGAACTGGATGGTGGTGAATGGAGATAAGGTCAATTTTCCCGGCGGAGGAACTCATTTCCACTATGGAGCTGACAAGTACATTGCTGCTCTTGCAAAAATGCTGAAATTTCCCCATGAAAGTCTCAACAACAGTGGCAAAATCAGAACCGTTCTAGATGTCGGTTGTGGAGTTGCTAGCTTTGGTGCGTATCTCCTTCCTCTTGACATTGTAGCAATGTCGCTTGCACCTAACGATGTGCACCAGAATCAGATTCAGTTTGCTTTGGAAAGAGGAATTCCCGCAACTCTAGGTGTATTGGGAACTATGAGACTGCCATATCCAAGCAGATCATTCGAATTCGCACACTGTTCAAGATGTAGAATTGATTGGCTTCAGAGGGATGGCATATTGCTGCTAGAGTTGGACAGGTTGCTGAAGCCAGGGGGCTATTTTGCCTATTCTTCACCGGAAGCCTATATGAAAGACGCGGAAGATCTCCAGATATGGAATGCCATGAGCAATCTTGTCAAACGCATGTGCTGGAAGATTGCTTCGAAAAGAGACCAGACTGTTATATGGGTTAAACCTCTCACAAATAGCTGTTATTTGAAGAGAGCTCCAGATACCAAACCACCTCTATGCAGTCCAAATGATGATCCAGATTCAGTTTGGCAGGTTCCAATGAAAGCTTGCATTACACCATATACAGATCAAATGCATCATGCCAAAGGTAGTGGACTGGTACCTTGGCCAAAACGACTGACTACTCCTCCACCTCGGCTGGAAGACCTTAATGTCGGTGAAGAAGAGTTCAAAAAGGATACGGCAGTCTGGCATCAAAGAGTGAAGTACTATTTGGAGCAAATGAAGCCAATGATTGGAAATGATACTTTTAGAAACATTATGGACCTGAGGGCAAATCTCGGTGGATTTGCAGCTGCGCTCATTGACAAAGATGTTTGGGTGATGAATGTTGTTCCTGTAAATGCTTCAAACACATTGAAGGTCATCTATGATAGAGGCCTGATGGGAACCATACACGACTGGTGTGAATCATTTTCAACTTATCCTCGTACTTATGATCTCCTTCATGCCTGGACTCTCTTCTCTGATATCTATGAGAAAGGCTGCAGCGTAGAAGACTTGCTTTTAGAAATGGACCGGATCCTTCGGCCAACAGGATTTGTGATTATTAGAGACAAGCCTTCAATGATAAAATACATCACTAACTATTTGCCCGTCTTGAAGTGGGATTCCTGGAAATTGATTGTCAATTCTGAATCTGATCCACTTTCTTCTGATGATGAGACAATATTGTTTGCACAAAAGCAGTTGTGGATACCGGATGAAAGTCAGTAG___AGATGTCATTTTGTAGACTAATTATTCAAGCAAATTTCATTAGCTTGTTACAGGATGGCTGAATATTGAGGATGCTAGTCTTCTTTGCTAGATGGTTACTACTTATTCAAGCAAATTCCATTAGCTTGTTGCGGGCTGGCTGAATATTTAGGATGCCAGTCTTCTTTGCTGAAAGAAAGGCGGCTGTAATACATT

Fln Alignment:

Contig122___LPHTHLAEEKSDQNWMVVNGDKVNFPGGGTHFHYGADKYIAALAKMLKFPHESLNNSGKIRTVLDVGCGVASFGAYLLPLDIVAMSLAPNDVHQNQIQFALERGIPATLGVLGTMRLPYPSRSFEFAHCSRCRIDWLQRDGIXXXXXXXXXKPGGYFAYSSPEAYMKDAEDLQIWNAMSNLVKRMCWKIASKRDQTVIWVKPLTNSCYLKRAPDTKPPLCSPNDDPDSVWQVPMKACITPYTDQMHHAKGSGLVPWPKRLTTPPPRLEDLNVGEEEFKKDTAVWHQRVKYYLEQMKPMIGNDTFRNIMDLRANLGGFAAALIDKDVWVMNVVPVNASNTLKVIYDRGLMGTIHDWCESFSTYPRTYDLLHAWTLFSDIYEKGCSVEDLLLEMDRILRPTGFVIIRDKPSMIKYITNYLPVLKWDSWKLIVNSESDPLSSDDETILFAQKQLWIPDES
B8LKS3________________IPHTHLAEEKSDQNWMIVNGDKINFPGGGTHFHNGADKYIAALADMLKISGGNLSNGGKIRTVLDVGCGVASFGAYLLPLDIMAMSLAPNDVHQNQIQFALERGIPATLGVLGTERLPYPSMSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYMQDEENLQIWNAMSDLVKRMCWKVASKRDQTVIWVKPLTNDCYLKRAPGTKPPLCNSEDDPDASWHVLMKACITPYSDKIHHAKGSGLAPWPKRLTAPPPRLVELGISEEDFVKDTKAWRQRVNSYWKHMKSEIEHDTLRNIMDMNANLGAFGAALKDKAVWVMNVVPENGPNTLKAIYDRGLMGTLHNWCEAFSTYPRTYDLLHAWNIFSDIDERGCSIEDLLLEMDRILRPTGFIIIRDKPAIVNYIMKYLAPLRWDSWSSNVEPESDPLSSGDEIVLMARKQLSLPGGS

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
804	12			87	0.992554
805	12	87			0.992554
806			87	12	0.992554
808		87		12	0.992554
825		87		12	0.992554
912	42			57	1.0
913		42	57		1.0
916	57			42	1.0
1017	12			87	0.992554
1019	12	87			0.992554
1023		87	12		0.992554
1024	87			12	0.992554
1025		87	12		0.992554
1057	14		85		0.993533
1058		14	85		0.993533
1060	85			14	0.993533
1061		85		14	0.993533
1105	14			85	0.993533
1109			14	14	0.984337
1131	14			85	0.993533
1244	70	30			1.0
1246	70			30	1.0
1340	83			16	0.994512
1371	25	75			0.996473
1372			66	33	0.997452
1373			66	33	0.997452
1484		33	66		0.997452
1485	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain