SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene120

Length: 273 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene120
CCTTGAAAGAAGGAGTTGAAGCTGCGAGGCTTCTTACATCAGAAGGCTTTTCTGAGAGTGCTCGTCATTTTAACCTAAAGCAGAAGTATAAGCATCAAAAAGTTGATTATTTGGATTTTGGTAGAAAGAATTGTTAATTACATTAGTTGAACGGTAAGGAGGATTGTAAATATTTTTTCCATTTGTCCTCTATGTAGATGATCCAATCATGAATATATATGAATTAGATCATGGAAATCTAATAAGCATTAGATGTTGACCATTTTTAACAGG

Ace file of the UniGene biog3_v1.0_unigene120 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3256	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Peptidyl-tRNA hydrolase [Arabidopsis thaliana] sp\|Q6NLS8.1\|PTHM_ARATH RecName: Full=Peptidyl-tRNA hydrolase, mitochondrial; AltName: Full=M-PTH; AltName: Full=Mitochondrial CRS2-like protein; AltName: Full=Mitochondrial RNA splicing factor; Flags: Precurs	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	peptidyl-trna mitochondrial-like	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Aminoacyl-tRNA hydrolase.	EC:3.1.1.29	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	77%
Blast2go	RNA processing	GO:0006396	Biological Process	77%
Blast2go	aminoacyl-tRNA hydrolase activity	GO:0004045	Molecular Function	77%
Blast2go	chloroplast	GO:0009507	Cellular Component	77%
Blast2go	mitochondrion	GO:0005739	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidyl-tRNA hydrolase	IPR001328	-	0.0	-
Sma3	Peptidyl-tRNA hydrolase, conserved site	IPR018171	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQJ5

Fln msg: your sequence is shorter than subject: 45 - 246

Fln protein: LKEGVEAARLLTSEGFSESARHFNLKQKYKHQKVDYLDFGRKNC*

Protein Length: 46

Fln nts: CCTTGAAAGAAGGAGTTGAAGCTGCGAGGCTTCTTACATCAGAAGGCTTTTCTGAGAGTGCTCGTCATTTTAACCTAAAGCAGAAGTATAAGCATCAAAAAGTTGATTATTTGGATTTTGGTAGAAAGAATTGTTAA___TTACATTAGTTGAACGGTAAGGAGGATTGTAAATATTTTTTCCATTTGTCCTCTATGTAGATGATCCAATCATGAATATATATGAATTAGATCATGGAAATCTAATAAGCATTAGATGTTGACCATTTTTAACAGG

Fln Alignment:

Contig120___LKEGVEAARLLTSEGFSESARHFNLKQKYKHQKV
A9NQJ5________________LQEGVDATRLLISEGFSQSIDGFNKRQKYKYHKV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
41	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain