SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene118

Length: 383 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene118
AAGCAGTGGTATCTTAACGTCAGAGTACGCGGGGAGTTTGGTTGCTCAGGAAACGAGTGAATTCCGGGCGGATTTACTGGTGGGTTTTATCTCCATCCTCTTACAGGAGGACGGGACGTTTTATTTGAAGGCTTCTTTCGCCTGTAGACGTTTTGTCGCCCTGCTGCCATGATGAAGGATCAGGAAGATATGGGAGGCCTGGAGGGAACAGCAGATATGATGGATTCTTATCCTCCAAGGCAGTTGCTGGATCGTCGGCTGAAACCACAGGCAGATCAGGAGATTCTCAAGTGCCCTCGCTGTGATTCCACCAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACTCAGCCTCGCCATTTCTGCAAGACCTGCAGGCG

Ace file of the UniGene biog3_v1.0_unigene118 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25690	1/2
SustainPine v2.0	sp_v2.0_unigene28338	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dof zinc finger protein 12 n=1 Tax=Hordeum vulgare subsp. vulgare RepID=A5HWG1_HORVD	-	-	4.0e-17	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	dof zinc finger protein	-	-	2.41959e-40	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	floral organ abscission	GO:0010227	Biological Process	2.41959e-40	82%
Blast2go	DNA binding	GO:0003677	Molecular Function	2.41959e-40	82%
Blast2go	nucleus	GO:0005634	Cellular Component	2.41959e-40	82%

Source	InterPros	Term	Type	Identity
Sma3	Thiolase	IPR002155	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Zinc finger, Dof-type	IPR003851	-	-
Sma3		IPR012335	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNI1

Fln msg: Distance to subject end: 222 aas, your sequence is shorter than subject: 71 - 299

Fln protein: MMKDQEDMGGLEGTADMMDSYPPRQLLDRRLKPQADQEILKCPRCDSTNTKFCYYNNYSLTQPRHFCKTCR

Protein Length: 72

Fln nts: AAGCAGTGGTATCTTAACGTCAGAGTACGCGGGGAGTTTGGTTGCTCAGGAAACGAGTGAATTCCGGGCGGATTTACTGGTGGGTTTTATCTCCATCCTCTTACAGGAGGACGGGACGTTTTATTTGAAGGCTTCTTTCGCCTGTAGACGTTTTGTCGCCCTGCTGCC_-_ATGATGAAGGATCAGGAAGATATGGGAGGCCTGGAGGGAACAGCAGATATGATGGATTCTTATCCTCCAAGGCAGTTGCTGGATCGTCGGCTGAAACCACAGGCAGATCAGGAGATTCTCAAGTGCCCTCGCTGTGATTCCACCAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACTCAGCCTCGCCATTTCTGCAAGACCTGCAGGCG

Fln Alignment:

Contig118___MMKDQ-----EDMGGLEGTADMMDSYPPRQLLDRRLKPQADQEILKCPRCDSTNTKFCYYNNYSLTQPRHFCKTCR
A9NNI1________________MMKDQSGMMQEEMGVLEGTGDMMDSYPPRQLLDRRLKPQGDQEILKCPRCDSTNTKFCYYNNYSLTQPRHFCKTCR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain