SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene115

Length: 279 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene115
TTCTCTAACGATTCTCATTCTCGCCCTGACGCGTCTCGAACTGGCGACGTGCTGCCACCGCGAAAGGGCGGGCACCGGCGGGCGCACAGTGAAATCCCGCGGCAGGTATCGTGGGACAGGGTCGGAAAAGGCGTGAAGAAGGAAGCTGAGTGGGATCGAGATGGCGACCTAAACATGGAAGTGGGGGATGGCGAGGATCTGTTCTCCATGTACATTGATCTGGATAAGCTCAACACTCTTAATACCACCTCCTCTGCTAACCCCGCGGACATTGGGGAA

Ace file of the UniGene biog3_v1.0_unigene115 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13939	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	bZIP transcription factor bZIP28 [Glycine max]	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	basic leucine zipper transcription factor-like protein	-	-	59%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	59%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	59%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	59%
Blast2go	protein dimerization activity	GO:0046983	Molecular Function	59%
Blast2go	nucleus	GO:0005634	Cellular Component	59%

Source	InterPros	Term	Type	e value	Identity
Sma3	bZIP transcription factor, bZIP-1	IPR011616	-	0.0	-
Sma3	Basic-leucine zipper domain	IPR004827	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ18

Fln msg: Distance to subject end: 338 aas, your sequence is shorter than subject: 93 - 585

Fln protein: FSNDSHSRPDASRTGDVLPPRKGGHRRAHSEIPRQVSWDRVGKGVKKEAEWDRDGDLNMEVGDGEDLFSMYIDLDKLNTLNTTSSANPADIGE

Protein Length: 94

Fln nts: TTCTCTAACGATTCTCATTCTCGCCCTGACGCGTCTCGAACTGGCGACGTGCTGCCACCGCGAAAGGGCGGGCACCGGCGGGCGCACAGTGAAATCCCGCGGCAGGTATCGTGGGACAGGGTCGGAAAAGGCGTGAAGAAGGAAGCTGAGTGGGATCGAGATGGCGACCTAAACATGGAAGTGGGGGATGGCGAGGATCTGTTCTCCATGTACATTGATCTGGATAAGCTCAACACTCTTAATACCACCTCCTCTGCTAACCCCGCGGACATTGGGGAA

Fln Alignment:

Contig115___FSNDSHSRPDASRTGDVLPPRKGGHRRAHSEIPRQVSWDRVGKGVKKEAEWDRDGDLNMEVGDGEDLFSMYIDLDKLNTLNTTSSANPADIGE
B8LQ18________________FSADSHSRPDASRTGDVLPPRKGGHRRAHSEIPRQVSWDKVGKGVKKEAEWDRDGDLNMEVGDGEDLFSMYIDLDKLNTLNTTSSANPADIGE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
90	25	75			0.996473
94		75		25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain